BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00109
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 172 3e-44
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 167 2e-42
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 155 7e-39
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 145 4e-36
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 107 2e-24
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 71 2e-13
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 50 2e-07
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 34 0.020
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.76
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 1.8
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy... 27 2.3
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 26 5.4
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 7.1
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy... 25 9.4
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 9.4
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 25 9.4
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 172 bits (419), Expect = 3e-44
Identities = 91/145 (62%), Positives = 105/145 (72%), Gaps = 1/145 (0%)
Frame = +3
Query: 78 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-N 254
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 255 TQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVXRGKPKIKVAYKGEDKTFYPEEVSSMVL 434
T + + + +S GKP ++V YKGE KTF PEE+SSMVL
Sbjct: 64 TIFDAKRLIGRKFDDPEVQSDMKHWPFKVIS-KDGKPVLQVEYKGETKTFTPEEISSMVL 122
Query: 435 TKMKETAEAYLGKTVQNAVITVPAY 509
KM+ETAEAYLG V +AV+TVPAY
Sbjct: 123 MKMRETAEAYLGGKVTDAVVTVPAY 147
Score = 126 bits (305), Expect = 2e-30
Identities = 68/133 (51%), Positives = 80/133 (60%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTRQT*DQGSI*G*RQNLLPRGSQFH 427
P +TIFDAKRLIGRKF+D VQ+DMKHWPF+V+S + Q G + P
Sbjct: 61 PHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSM 120
Query: 428 GAYENEGNCRSLSWQNCAECSYHGSRVFNDSQRQATKDAGTISGLNVLRIINEPTAAAIA 607
+ + + FNDSQRQATKDAG I+GLNVLRIINEPTAAAIA
Sbjct: 121 VLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIA 180
Query: 608 YGLDKKGTGERNV 646
YGLD+ GE NV
Sbjct: 181 YGLDRSNQGESNV 193
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 167 bits (405), Expect = 2e-42
Identities = 88/145 (60%), Positives = 107/145 (73%), Gaps = 1/145 (0%)
Frame = +3
Query: 78 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-N 254
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 255 TQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVXRGKPKIKVAYKGEDKTFYPEEVSSMVL 434
T + + + + + ++ GKP I+V +KGE KTF PEE+SSMVL
Sbjct: 64 TIFDAKRLIGRRFNDPEV-QSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVL 122
Query: 435 TKMKETAEAYLGKTVQNAVITVPAY 509
KM+E+AEA+LG V +AV+TVPAY
Sbjct: 123 LKMRESAEAFLGGKVTDAVVTVPAY 147
Score = 121 bits (292), Expect = 8e-29
Identities = 65/133 (48%), Positives = 78/133 (58%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTRQT*DQGSI*G*RQNLLPRGSQFH 427
P +TIFDAKRLIGR+F D VQ+DMKHWPF+V+ + Q G + P
Sbjct: 61 PHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSM 120
Query: 428 GAYENEGNCRSLSWQNCAECSYHGSRVFNDSQRQATKDAGTISGLNVLRIINEPTAAAIA 607
+ + + + FNDSQRQATKDAG I+GLNVLRIINEPTAAAIA
Sbjct: 121 VLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIA 180
Query: 608 YGLDKKGTGERNV 646
YGLD+ E NV
Sbjct: 181 YGLDRSNQHETNV 193
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 155 bits (375), Expect = 7e-39
Identities = 77/144 (53%), Positives = 103/144 (71%), Gaps = 1/144 (0%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-NT 257
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP NT
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 258 QYSMPNVSSDVSSKMLLCKPT*STGLSRLSVXRGKPKIKVAYKGEDKTFYPEEVSSMVLT 437
+ + + + + K S ++ + +P ++V G+ K F PEE+S+M+L+
Sbjct: 98 IFDIKRLIGRKFDEKTMAKDIKSFPFHIVN-DKNRPLVEVNVGGKKKKFTPEEISAMILS 156
Query: 438 KMKETAEAYLGKTVQNAVITVPAY 509
KMK+TAEAYLGK V +AV+TVPAY
Sbjct: 157 KMKQTAEAYLGKPVTHAVVTVPAY 180
Score = 108 bits (259), Expect = 8e-25
Identities = 56/128 (43%), Positives = 79/128 (61%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTRQT*DQGSI*G*RQNLLPRGSQFH 427
P++TIFD KRLIGRKF++ T+ D+K +PF +V+ + + ++ G ++ P
Sbjct: 94 PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAM 153
Query: 428 GAYENEGNCRSLSWQNCAECSYHGSRVFNDSQRQATKDAGTISGLNVLRIINEPTAAAIA 607
+ + + + FND+QRQATKDAGTI+GLNV+RI+NEPTAAAIA
Sbjct: 154 ILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIA 213
Query: 608 YGLDKKGT 631
YGLDK T
Sbjct: 214 YGLDKTDT 221
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 145 bits (352), Expect = 4e-36
Identities = 80/145 (55%), Positives = 95/145 (65%), Gaps = 1/145 (0%)
Frame = +3
Query: 78 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-N 254
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP N
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 255 TQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVXRGKPKIKVAYKGEDKTFYPEEVSSMVL 434
T + + K + G P I+V Y GE K F +E+S+MVL
Sbjct: 68 TVFDAKRLIGRRYEDPETQKDIKHWPFKVID-NNGIPTIEVNYLGEKKQFTAQEISAMVL 126
Query: 435 TKMKETAEAYLGKTVQNAVITVPAY 509
TKMKE +EA L K V+ AVITVPAY
Sbjct: 127 TKMKEISEAKLNKRVEKAVITVPAY 151
Score = 106 bits (255), Expect = 2e-24
Identities = 58/133 (43%), Positives = 79/133 (59%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTRQT*DQGSI*G*RQNLLPRGSQFH 427
P++T+FDAKRLIGR++ED Q D+KHWPF+V+ + + G ++ +
Sbjct: 65 PRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAM 124
Query: 428 GAYENEGNCRSLSWQNCAECSYHGSRVFNDSQRQATKDAGTISGLNVLRIINEPTAAAIA 607
+ + + + + F+DSQR ATKDAG I+GLNVLRIINEPTAAAIA
Sbjct: 125 VLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIA 184
Query: 608 YGLDKKGTGERNV 646
YGLD K +NV
Sbjct: 185 YGLDAKSDKPKNV 197
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 107 bits (256), Expect = 2e-24
Identities = 59/149 (39%), Positives = 86/149 (57%), Gaps = 2/149 (1%)
Frame = +3
Query: 69 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 245
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 246 NP-NTQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVXRGKPKIKVAYKGEDKTFYPEEVS 422
NP NT ++ + + + + + G + + KT+ P ++
Sbjct: 109 NPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGDAWL----EARGKTYSPSQIG 164
Query: 423 SMVLTKMKETAEAYLGKTVQNAVITVPAY 509
+L+KM+ETA YLGK V+NAV+TVPAY
Sbjct: 165 GFILSKMRETASTYLGKDVKNAVVTVPAY 193
Score = 88.2 bits (209), Expect = 9e-19
Identities = 53/128 (41%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTRQT*DQGSI*G*RQNLLPRGSQFH 427
P++T F KRLIGR+F++ VQ D+K P+++V + G + SQ
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSN-----GDAWLEARGKTYSPSQIG 164
Query: 428 GAYENEGNCRSLSW--QNCAECSYHGSRVFNDSQRQATKDAGTISGLNVLRIINEPTAAA 601
G ++ + ++ ++ FNDSQRQATK AG I+GLNVLR++NEPTAAA
Sbjct: 165 GFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPTAAA 224
Query: 602 IAYGLDKK 625
+AYGLDKK
Sbjct: 225 LAYGLDKK 232
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 70.5 bits (165), Expect = 2e-13
Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
Frame = +3
Query: 66 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 245
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 246 N-PNTQYSMPNVSSDVSSKMLLCKPT*STGLS-RLSVXRGKPKIKVAYKGEDKTFYPEEV 419
N NT S+ ++ + K S +S +L+ G KV Y E+ F ++
Sbjct: 63 NFRNTVGSLKRLAGRTYDDPEI-KDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQL 121
Query: 420 SSMVLTKMKETAEAYLGKTVQNAVITVPAY 509
+ TK+K AEA L +V + VI++PA+
Sbjct: 122 IAAYFTKIKAIAEAELIGSVSDVVISIPAW 151
Score = 43.6 bits (98), Expect = 3e-05
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +2
Query: 509 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDK 622
F D QR+A +A I+GLN LR++N+ AAA+ YG+ K
Sbjct: 152 FTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYGITK 189
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 50.4 bits (115), Expect = 2e-07
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 5/148 (3%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN-PNT 257
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+ N N+
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86
Query: 258 QYSMPNVSSDVSSKMLLCKPT*STGLSRLSVXRGKPKIKVAYKGE----DKTFYPEEVSS 425
+ ++ ++ L S + G KI V E +K E S
Sbjct: 87 VTNFRDLLGKSHDELTLHHCHYSANPVNVEGQIGF-KITVQEDEESDPKEKILTAHEASV 145
Query: 426 MVLTKMKETAEAYLGKTVQNAVITVPAY 509
L ++ E+AE +LG V V++VP Y
Sbjct: 146 RHLRRLTESAEDFLGTKVNGCVMSVPVY 173
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 33.9 bits (74), Expect = 0.020
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 5/148 (3%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNT 257
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFP-- 82
Query: 258 QYSMPNVSSDVSS---KMLLCKPT*STGLSRLSVXRGKPKIKVAYKGEDKTFYP-EEVSS 425
+S+ NV + + + +L + S+ + V + +++ D+ Y EE+ +
Sbjct: 83 AHSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEEIIA 142
Query: 426 MVLTKMKETAEAYLGKTVQNAVITVPAY 509
M + AE + + + V+TVP +
Sbjct: 143 MTMEHYISLAEEMAHEKITDLVLTVPPH 170
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.76
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 73 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 168
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +3
Query: 177 PSYVAFTDTERLIGDAAKNQVAMNPNTQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVXR 356
P +A T ER++ AAK A+N Y++ ++ D K++ C S +S
Sbjct: 1252 PQDLAPTTIERIVDAAAKIGEALNITGPYNIQFIAKDNEIKVIECNVRASRSFPFVSKVI 1311
Query: 357 GKPKIKVA 380
G I +A
Sbjct: 1312 GVDMISMA 1319
>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 482
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -3
Query: 367 LGLPRXTDN-LERPVLHVGLHSSIFELTSDETFGIEYCVLGFIATWFLAASPMRRSVSVN 191
LGL + TD +E+ HV + + FE+ + E + V+ I T+ LAA + +
Sbjct: 47 LGLTQITDEAIEQLKAHVKITAPEFEIAAKEEKRQRHDVMAHIYTYGLAAPAASGIIHLG 106
Query: 190 AT 185
AT
Sbjct: 107 AT 108
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1
Query: 159 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCIFNQSCYLFLKQLSKRARL 1
G W SP S + H ++++ +F +RVL C+ L K +K+A L
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCMI-----LIWKSFAKQALL 323
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 222 AAKNQVAMNPNTQYSMPNVSSDVSSKML 305
A K Q+ +NP + +PNV D + +L
Sbjct: 323 ARKRQIQLNPFPPWDVPNVLEDQMNSLL 350
>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 271
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/20 (45%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = -3
Query: 307 SSIFELTSDETFGIEY-CVL 251
S+++ELT DET +++ C+L
Sbjct: 51 STVYELTGDETLNLKFTCIL 70
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 59 QNGKSTRSRNRSGYHVLLRWCLPARE 136
+NGK T +R +S + W P++E
Sbjct: 477 RNGKKTPTRTKSRMQQFINWFKPSKE 502
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 246 NPNTQYSMPNVSSDVSSKMLLCKPT*STGLS 338
N NTQ+S+PN S V L +P G +
Sbjct: 327 NLNTQFSLPNNSQPVFGHTSLTQPVNPNGFT 357
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,136
Number of Sequences: 5004
Number of extensions: 59506
Number of successful extensions: 205
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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