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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00109
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...   172   3e-44
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...   167   2e-42
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...   155   7e-39
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...   145   4e-36
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...   107   2e-24
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    71   2e-13
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    50   2e-07
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    34   0.020
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    29   0.76 
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   1.8  
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    27   2.3  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    26   5.4  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   7.1  
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    25   9.4  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   9.4  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    25   9.4  

>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score =  172 bits (419), Expect = 3e-44
 Identities = 91/145 (62%), Positives = 105/145 (72%), Gaps = 1/145 (0%)
 Frame = +3

Query: 78  AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-N 254
           ++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP N
Sbjct: 4   SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63

Query: 255 TQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVXRGKPKIKVAYKGEDKTFYPEEVSSMVL 434
           T +    +         +           +S   GKP ++V YKGE KTF PEE+SSMVL
Sbjct: 64  TIFDAKRLIGRKFDDPEVQSDMKHWPFKVIS-KDGKPVLQVEYKGETKTFTPEEISSMVL 122

Query: 435 TKMKETAEAYLGKTVQNAVITVPAY 509
            KM+ETAEAYLG  V +AV+TVPAY
Sbjct: 123 MKMRETAEAYLGGKVTDAVVTVPAY 147



 Score =  126 bits (305), Expect = 2e-30
 Identities = 68/133 (51%), Positives = 80/133 (60%)
 Frame = +2

Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTRQT*DQGSI*G*RQNLLPRGSQFH 427
           P +TIFDAKRLIGRKF+D  VQ+DMKHWPF+V+S   +   Q    G  +   P      
Sbjct: 61  PHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSM 120

Query: 428 GAYENEGNCRSLSWQNCAECSYHGSRVFNDSQRQATKDAGTISGLNVLRIINEPTAAAIA 607
              +      +       +        FNDSQRQATKDAG I+GLNVLRIINEPTAAAIA
Sbjct: 121 VLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIA 180

Query: 608 YGLDKKGTGERNV 646
           YGLD+   GE NV
Sbjct: 181 YGLDRSNQGESNV 193


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score =  167 bits (405), Expect = 2e-42
 Identities = 88/145 (60%), Positives = 107/145 (73%), Gaps = 1/145 (0%)
 Frame = +3

Query: 78  AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-N 254
           ++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP N
Sbjct: 4   SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63

Query: 255 TQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVXRGKPKIKVAYKGEDKTFYPEEVSSMVL 434
           T +    +     +   + +        ++    GKP I+V +KGE KTF PEE+SSMVL
Sbjct: 64  TIFDAKRLIGRRFNDPEV-QSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVL 122

Query: 435 TKMKETAEAYLGKTVQNAVITVPAY 509
            KM+E+AEA+LG  V +AV+TVPAY
Sbjct: 123 LKMRESAEAFLGGKVTDAVVTVPAY 147



 Score =  121 bits (292), Expect = 8e-29
 Identities = 65/133 (48%), Positives = 78/133 (58%)
 Frame = +2

Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTRQT*DQGSI*G*RQNLLPRGSQFH 427
           P +TIFDAKRLIGR+F D  VQ+DMKHWPF+V+    +   Q    G  +   P      
Sbjct: 61  PHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSM 120

Query: 428 GAYENEGNCRSLSWQNCAECSYHGSRVFNDSQRQATKDAGTISGLNVLRIINEPTAAAIA 607
              +   +  +       +        FNDSQRQATKDAG I+GLNVLRIINEPTAAAIA
Sbjct: 121 VLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIA 180

Query: 608 YGLDKKGTGERNV 646
           YGLD+    E NV
Sbjct: 181 YGLDRSNQHETNV 193


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score =  155 bits (375), Expect = 7e-39
 Identities = 77/144 (53%), Positives = 103/144 (71%), Gaps = 1/144 (0%)
 Frame = +3

Query: 81  VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-NT 257
           +GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ   NP NT
Sbjct: 38  IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97

Query: 258 QYSMPNVSSDVSSKMLLCKPT*STGLSRLSVXRGKPKIKVAYKGEDKTFYPEEVSSMVLT 437
            + +  +      +  + K   S     ++  + +P ++V   G+ K F PEE+S+M+L+
Sbjct: 98  IFDIKRLIGRKFDEKTMAKDIKSFPFHIVN-DKNRPLVEVNVGGKKKKFTPEEISAMILS 156

Query: 438 KMKETAEAYLGKTVQNAVITVPAY 509
           KMK+TAEAYLGK V +AV+TVPAY
Sbjct: 157 KMKQTAEAYLGKPVTHAVVTVPAY 180



 Score =  108 bits (259), Expect = 8e-25
 Identities = 56/128 (43%), Positives = 79/128 (61%)
 Frame = +2

Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTRQT*DQGSI*G*RQNLLPRGSQFH 427
           P++TIFD KRLIGRKF++ T+  D+K +PF +V+   +   + ++ G ++   P      
Sbjct: 94  PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAM 153

Query: 428 GAYENEGNCRSLSWQNCAECSYHGSRVFNDSQRQATKDAGTISGLNVLRIINEPTAAAIA 607
              + +    +   +            FND+QRQATKDAGTI+GLNV+RI+NEPTAAAIA
Sbjct: 154 ILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIA 213

Query: 608 YGLDKKGT 631
           YGLDK  T
Sbjct: 214 YGLDKTDT 221


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score =  145 bits (352), Expect = 4e-36
 Identities = 80/145 (55%), Positives = 95/145 (65%), Gaps = 1/145 (0%)
 Frame = +3

Query: 78  AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-N 254
           A+GIDLGTTYSCV V++   VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP N
Sbjct: 8   AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67

Query: 255 TQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVXRGKPKIKVAYKGEDKTFYPEEVSSMVL 434
           T +    +           K         +    G P I+V Y GE K F  +E+S+MVL
Sbjct: 68  TVFDAKRLIGRRYEDPETQKDIKHWPFKVID-NNGIPTIEVNYLGEKKQFTAQEISAMVL 126

Query: 435 TKMKETAEAYLGKTVQNAVITVPAY 509
           TKMKE +EA L K V+ AVITVPAY
Sbjct: 127 TKMKEISEAKLNKRVEKAVITVPAY 151



 Score =  106 bits (255), Expect = 2e-24
 Identities = 58/133 (43%), Positives = 79/133 (59%)
 Frame = +2

Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTRQT*DQGSI*G*RQNLLPRGSQFH 427
           P++T+FDAKRLIGR++ED   Q D+KHWPF+V+        + +  G ++    +     
Sbjct: 65  PRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAM 124

Query: 428 GAYENEGNCRSLSWQNCAECSYHGSRVFNDSQRQATKDAGTISGLNVLRIINEPTAAAIA 607
              + +    +   +   +        F+DSQR ATKDAG I+GLNVLRIINEPTAAAIA
Sbjct: 125 VLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIA 184

Query: 608 YGLDKKGTGERNV 646
           YGLD K    +NV
Sbjct: 185 YGLDAKSDKPKNV 197


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score =  107 bits (256), Expect = 2e-24
 Identities = 59/149 (39%), Positives = 86/149 (57%), Gaps = 2/149 (1%)
 Frame = +3

Query: 69  KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 245
           K P +GIDLGTT SC+ + +    ++IAN +G RTTPS VAFT D ERL+G +AK Q  +
Sbjct: 49  KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108

Query: 246 NP-NTQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVXRGKPKIKVAYKGEDKTFYPEEVS 422
           NP NT ++   +      +  + +         +    G   +    +   KT+ P ++ 
Sbjct: 109 NPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGDAWL----EARGKTYSPSQIG 164

Query: 423 SMVLTKMKETAEAYLGKTVQNAVITVPAY 509
             +L+KM+ETA  YLGK V+NAV+TVPAY
Sbjct: 165 GFILSKMRETASTYLGKDVKNAVVTVPAY 193



 Score = 88.2 bits (209), Expect = 9e-19
 Identities = 53/128 (41%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
 Frame = +2

Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTRQT*DQGSI*G*RQNLLPRGSQFH 427
           P++T F  KRLIGR+F++  VQ D+K  P+++V  +      G      +      SQ  
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSN-----GDAWLEARGKTYSPSQIG 164

Query: 428 GAYENEGNCRSLSW--QNCAECSYHGSRVFNDSQRQATKDAGTISGLNVLRIINEPTAAA 601
           G   ++    + ++  ++           FNDSQRQATK AG I+GLNVLR++NEPTAAA
Sbjct: 165 GFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPTAAA 224

Query: 602 IAYGLDKK 625
           +AYGLDKK
Sbjct: 225 LAYGLDKK 232


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
 Frame = +3

Query: 66  AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 245
           ++   VGID G + + + V ++  +++I N+  NR+TPS V++ +  R +G+AAK+  A 
Sbjct: 3   SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62

Query: 246 N-PNTQYSMPNVSSDVSSKMLLCKPT*STGLS-RLSVXRGKPKIKVAYKGEDKTFYPEEV 419
           N  NT  S+  ++        + K   S  +S +L+   G    KV Y  E+  F   ++
Sbjct: 63  NFRNTVGSLKRLAGRTYDDPEI-KDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQL 121

Query: 420 SSMVLTKMKETAEAYLGKTVQNAVITVPAY 509
            +   TK+K  AEA L  +V + VI++PA+
Sbjct: 122 IAAYFTKIKAIAEAELIGSVSDVVISIPAW 151



 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 19/38 (50%), Positives = 27/38 (71%)
 Frame = +2

Query: 509 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDK 622
           F D QR+A  +A  I+GLN LR++N+  AAA+ YG+ K
Sbjct: 152 FTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYGITK 189


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 5/148 (3%)
 Frame = +3

Query: 81  VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN-PNT 257
           +GI  G   S +   + GK +++AN++GNR  PS +++   +   G  A+ Q+  N  N+
Sbjct: 27  IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86

Query: 258 QYSMPNVSSDVSSKMLLCKPT*STGLSRLSVXRGKPKIKVAYKGE----DKTFYPEEVSS 425
             +  ++      ++ L     S     +    G  KI V    E    +K     E S 
Sbjct: 87  VTNFRDLLGKSHDELTLHHCHYSANPVNVEGQIGF-KITVQEDEESDPKEKILTAHEASV 145

Query: 426 MVLTKMKETAEAYLGKTVQNAVITVPAY 509
             L ++ E+AE +LG  V   V++VP Y
Sbjct: 146 RHLRRLTESAEDFLGTKVNGCVMSVPVY 173


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 5/148 (3%)
 Frame = +3

Query: 81  VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNT 257
           + ID GT ++   + + G  +EI+      R   S VAF   ER+ G  A N     P  
Sbjct: 25  LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFP-- 82

Query: 258 QYSMPNVSSDVSS---KMLLCKPT*STGLSRLSVXRGKPKIKVAYKGEDKTFYP-EEVSS 425
            +S+ NV   + +   + +L +   S+  +   V   +    +++   D+  Y  EE+ +
Sbjct: 83  AHSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEEIIA 142

Query: 426 MVLTKMKETAEAYLGKTVQNAVITVPAY 509
           M +      AE    + + + V+TVP +
Sbjct: 143 MTMEHYISLAEEMAHEKITDLVLTVPPH 170


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 73  HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 168
           HP   S W+P    LVS+    W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +3

Query: 177  PSYVAFTDTERLIGDAAKNQVAMNPNTQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVXR 356
            P  +A T  ER++  AAK   A+N    Y++  ++ D   K++ C    S     +S   
Sbjct: 1252 PQDLAPTTIERIVDAAAKIGEALNITGPYNIQFIAKDNEIKVIECNVRASRSFPFVSKVI 1311

Query: 357  GKPKIKVA 380
            G   I +A
Sbjct: 1312 GVDMISMA 1319


>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 367 LGLPRXTDN-LERPVLHVGLHSSIFELTSDETFGIEYCVLGFIATWFLAASPMRRSVSVN 191
           LGL + TD  +E+   HV + +  FE+ + E     + V+  I T+ LAA      + + 
Sbjct: 47  LGLTQITDEAIEQLKAHVKITAPEFEIAAKEEKRQRHDVMAHIYTYGLAAPAASGIIHLG 106

Query: 190 AT 185
           AT
Sbjct: 107 AT 108


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -1

Query: 159 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCIFNQSCYLFLKQLSKRARL 1
           G W  SP S +  H   ++++  +F +RVL   C+      L  K  +K+A L
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCMI-----LIWKSFAKQALL 323


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 222 AAKNQVAMNPNTQYSMPNVSSDVSSKML 305
           A K Q+ +NP   + +PNV  D  + +L
Sbjct: 323 ARKRQIQLNPFPPWDVPNVLEDQMNSLL 350


>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/20 (45%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = -3

Query: 307 SSIFELTSDETFGIEY-CVL 251
           S+++ELT DET  +++ C+L
Sbjct: 51  STVYELTGDETLNLKFTCIL 70


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 59  QNGKSTRSRNRSGYHVLLRWCLPARE 136
           +NGK T +R +S     + W  P++E
Sbjct: 477 RNGKKTPTRTKSRMQQFINWFKPSKE 502


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 246 NPNTQYSMPNVSSDVSSKMLLCKPT*STGLS 338
           N NTQ+S+PN S  V     L +P    G +
Sbjct: 327 NLNTQFSLPNNSQPVFGHTSLTQPVNPNGFT 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,136
Number of Sequences: 5004
Number of extensions: 59506
Number of successful extensions: 205
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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