Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00109
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 197 6e-51
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 188 3e-48
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 185 3e-47
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 153 2e-37
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 93 1e-19
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 55 4e-08
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 3e-04
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08) 31 0.81
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 0.81
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3) 29 2.5
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 4.3
SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_47707| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_28392| Best HMM Match : Exo_endo_phos (HMM E-Value=0.77) 28 7.5
SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14) 28 7.5
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 27 9.9
SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025) 27 9.9
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 197 bits (481), Expect = 6e-51
Identities = 102/151 (67%), Positives = 117/151 (77%), Gaps = 2/151 (1%)
Frame = +3
Query: 63 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 242
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 243 MNP-NTQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVXRG-KPKIKVAYKGEDKTFYPEE 416
MNP NT + + ++ + T + G +PKI+V +KGE K+F+PEE
Sbjct: 61 MNPENTVFDAKRLIGRKFDDPVVARD--MTHWPFHVIREGERPKIQVEFKGEKKSFFPEE 118
Query: 417 VSSMVLTKMKETAEAYLGKTVQNAVITVPAY 509
+SSMVLTKMKETAEAYLG V +AV+TVPAY
Sbjct: 119 ISSMVLTKMKETAEAYLGAKVTDAVVTVPAY 149
Score = 124 bits (298), Expect = 8e-29
Identities = 66/133 (49%), Positives = 81/133 (60%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTRQT*DQGSI*G*RQNLLPRGSQFH 427
P++T+FDAKRLIGRKF+D V DM HWPF V+ + Q G +++ P
Sbjct: 63 PENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEISSM 122
Query: 428 GAYENEGNCRSLSWQNCAECSYHGSRVFNDSQRQATKDAGTISGLNVLRIINEPTAAAIA 607
+ + + + F+DSQRQATKDAGTI+GLNVLRIINEPTAAAIA
Sbjct: 123 VLTKMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182
Query: 608 YGLDKKGTGERNV 646
YGLDKK ERNV
Sbjct: 183 YGLDKKVGVERNV 195
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 188 bits (459), Expect = 3e-48
Identities = 99/150 (66%), Positives = 111/150 (74%), Gaps = 1/150 (0%)
Frame = +3
Query: 63 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 242
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 243 MNP-NTQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVXRGKPKIKVAYKGEDKTFYPEEV 419
+NP NT + + + +S KPKI+V YKGE KTF EE+
Sbjct: 61 LNPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIIS-DNNKPKIQVEYKGERKTFAAEEI 119
Query: 420 SSMVLTKMKETAEAYLGKTVQNAVITVPAY 509
SSMVL KMKETAEAYLG+ V +AVITVPAY
Sbjct: 120 SSMVLGKMKETAEAYLGQKVTSAVITVPAY 149
Score = 130 bits (313), Expect = 1e-30
Identities = 67/133 (50%), Positives = 86/133 (64%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTRQT*DQGSI*G*RQNLLPRGSQFH 427
P++TIFDAKRLIGR+++DATVQ+DMK WPF+++S + Q G R+
Sbjct: 63 PENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISSM 122
Query: 428 GAYENEGNCRSLSWQNCAECSYHGSRVFNDSQRQATKDAGTISGLNVLRIINEPTAAAIA 607
+ + + Q FNDSQRQATKDAGTI+GLNVLR+INEPTAAA+A
Sbjct: 123 VLGKMKETAEAYLGQKVTSAVITVPAYFNDSQRQATKDAGTIAGLNVLRVINEPTAAALA 182
Query: 608 YGLDKKGTGERNV 646
YGLDK +GE+NV
Sbjct: 183 YGLDKSLSGEKNV 195
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 185 bits (450), Expect = 3e-47
Identities = 104/174 (59%), Positives = 118/174 (67%), Gaps = 25/174 (14%)
Frame = +3
Query: 63 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 242
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 243 MNP-NT----------QYSMPNVSSDVSS--------------KMLLCKPT*STGLSRLS 347
MNP NT ++ P V D+ K+ T + +
Sbjct: 61 MNPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVV 120
Query: 348 VXRGKPKIKVAYKGEDKTFYPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAY 509
G+PK+KV YKGE KTF+ EE+SSMVL KMKETAEAYLG V +AV+TVPAY
Sbjct: 121 NEAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVPAY 174
Score = 85.0 bits (201), Expect = 5e-17
Identities = 42/46 (91%), Positives = 42/46 (91%)
Frame = +2
Query: 509 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNV 646
FNDSQRQATKDAG ISGLNVLRIINEPTAAAIAYGLDKK ERNV
Sbjct: 243 FNDSQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKVGQERNV 288
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/34 (70%), Positives = 29/34 (85%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVS 349
P +TIFDAKRLIGR+F+D V+ DMKHW FEVV+
Sbjct: 63 PTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVN 96
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/32 (75%), Positives = 28/32 (87%)
Frame = +3
Query: 414 EVSSMVLTKMKETAEAYLGKTVQNAVITVPAY 509
++SSMVL KMKETAEAYLG V +AV+TVPAY
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAY 242
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 509 FNDSQRQATKDAG 547
FNDSQRQATKDAG
Sbjct: 175 FNDSQRQATKDAG 187
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 153 bits (370), Expect = 2e-37
Identities = 83/145 (57%), Positives = 100/145 (68%), Gaps = 2/145 (1%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNP-N 254
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ NP N
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNPEN 763
Query: 255 TQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVXRGKPKIKVAYKGEDKTFYPEEVSSMVL 434
T + + + + + KP ++V K E KTF EE+S+MVL
Sbjct: 764 TVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNK-KPHVQVKVKDEIKTFAAEEISAMVL 822
Query: 435 TKMKETAEAYLGKTVQNAVITVPAY 509
TKMKETAEAYLGK V +AV+TVPAY
Sbjct: 823 TKMKETAEAYLGKKVTHAVVTVPAY 847
Score = 105 bits (252), Expect = 3e-23
Identities = 57/133 (42%), Positives = 80/133 (60%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTRQT*DQGSI*G*RQNLLPRGSQFH 427
P++T+FDAKRLIGR ++D +VQ D+K +PF+VV ++ Q + +
Sbjct: 761 PENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISAM 820
Query: 428 GAYENEGNCRSLSWQNCAECSYHGSRVFNDSQRQATKDAGTISGLNVLRIINEPTAAAIA 607
+ + + + FND+QRQATKDAG I+GL V+RIINEPTAAAIA
Sbjct: 821 VLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGAIAGLTVMRIINEPTAAAIA 880
Query: 608 YGLDKKGTGERNV 646
YG+DKK GE+N+
Sbjct: 881 YGMDKK-EGEKNI 892
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 93.5 bits (222), Expect = 1e-19
Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 3/167 (1%)
Frame = +3
Query: 69 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 242
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 243 MNP-NTQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVXRGKPKIKVAYKGEDKTFYPEEV 419
+NP NT Y +K L + + RG V KG PEE+
Sbjct: 90 INPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEI 149
Query: 420 SSMVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLA 560
V+ K++ AE L TV AV++VPA +K + ++ SLA
Sbjct: 150 GGYVIKKLRTMAERNLTTTVTKAVMSVPA-EFDIKQRNATVKAASLA 195
Score = 64.9 bits (151), Expect = 5e-11
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTRQT*DQGSI*G*RQNLLPRGSQFH 427
P++TI+DAKR IG+ F + K + F V + R + G + G + N +
Sbjct: 92 PKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRG--NAGFLVGKKGNFTVITPEEI 149
Query: 428 GAYENEGNCRSLSWQNCA----ECSYHGSRVFNDSQRQATKDAGTISGLNVLRIINEPTA 595
G Y + R+++ +N + F+ QR AT A +++G+ VLR+INEPTA
Sbjct: 150 GGYVIK-KLRTMAERNLTTTVTKAVMSVPAEFDIKQRNATVKAASLAGITVLRVINEPTA 208
Query: 596 AAIAYGLDKKGTGERNV 646
AA+AYGL KK G NV
Sbjct: 209 AALAYGLHKK-EGVANV 224
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 58.4 bits (135), Expect = 5e-09
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Frame = +2
Query: 251 QHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTRQT*D-QGSI*G*RQNLLPRGSQFH 427
++TI KR IGRKF D VQ ++ H P++VV + Q G ++ P
Sbjct: 120 KNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVMAM 179
Query: 428 GAYENEGNCRSLSWQNCAECSYHGSRVFNDSQRQATKDAGTISGLNVLRIINEPTAAAIA 607
+ +C + D QR+ DA +GLN LR++N+ TA ++A
Sbjct: 180 LFTRLKTTAEIALKTKVTDCVISVPSYYTDRQRRCMLDASATAGLNCLRLMNDTTAVSLA 239
Query: 608 YGLDKK 625
YG+ K+
Sbjct: 240 YGIYKQ 245
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 236
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +3
Query: 369 IKVAYKGEDKTFYPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAY 509
I+V Y G+ + F PE+V +M+ T++K TAE L V + VI+VP+Y
Sbjct: 160 IQVQYLGKQEVFSPEQVMAMLFTRLKTTAEIALKTKVTDCVISVPSY 206
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 55.2 bits (127), Expect = 4e-08
Identities = 39/71 (54%), Positives = 42/71 (59%), Gaps = 26/71 (36%)
Frame = +2
Query: 509 FNDSQRQATKDAGTISGLNVL------------------------RIINEPTAAAIAYGL 616
FND+QRQATKDAGTI+GL+VL RIINEPTAAAIAYGL
Sbjct: 49 FNDAQRQATKDAGTIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIAYGL 108
Query: 617 DKK--GTGERN 643
DK G ERN
Sbjct: 109 DKARGGKAERN 119
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/47 (51%), Positives = 36/47 (76%)
Frame = +3
Query: 369 IKVAYKGEDKTFYPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAY 509
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVPA+
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAH 48
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +3
Query: 132 GKVEIIANDQGNRTTPSYVAFTDTERLI--GDAAKNQVAMNP-NTQYSMPNVSSDVSSKM 302
G IIAND G+R TP+ VAF+DTE+LI +V N N Q S V + + KM
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLIDKDGLPYYEVESNERNIQVSPKEVINMIYKKM 142
Query: 303 L 305
L
Sbjct: 143 L 143
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +2
Query: 509 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGL 616
FN ++R+A A + GLNVL+I+N TA A+ YGL
Sbjct: 116 FNQAERRALLRAAELVGLNVLQIMNSNTAVALNYGL 151
Score = 35.1 bits (77), Expect = 0.050
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 363 PKIKVAYKGEDKTFYPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAY 509
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP +
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVPPF 115
>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
Length = 1011
Score = 31.1 bits (67), Expect = 0.81
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +3
Query: 333 LSRLSVXRGKPKIKVAYKGEDKTFYPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYS 512
L+++ + +PK K + E+ EE +M ++K LGK V+ + T +
Sbjct: 645 LTQVDLYNMQPKFKKTKEEEEFDKLLEEADAMTQQEVKNVKNIKLGKNVKTQLYTCEPCN 704
Query: 513 MTLKDKPQKMQ 545
+TL + Q Q
Sbjct: 705 ITLNSQKQMSQ 715
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +3
Query: 141 EIIANDQGNRTTPSYVAFT-DTERL 212
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
Length = 350
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 249 GSSPPGSWRHLR*DARCL*TQHKTEWSCCPGRW 151
GS PPG W R +AR T +T +SC PG W
Sbjct: 206 GSCPPGFWCRKRREARAA-TDLET-YSCPPGFW 236
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 9 HVC*VVLRTSNKTD*KYKMAKAPAVGIDL 95
HVC +V T K K ++K PA GI+L
Sbjct: 1200 HVCNIVSNTETKITCKLDVSKTPAPGIEL 1228
>SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +2
Query: 50 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 226
L++ N + ++ + R GY L R C R + +R + H++L R +RC
Sbjct: 225 LRLVNTRDDKTHDKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTETETRFCAKRCA 282
Query: 227 QEPGGDEPQHTIFDA 271
G +P++T F+A
Sbjct: 283 GTASGMDPKNTPFNA 297
>SB_47707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 627
Score = 28.3 bits (60), Expect = 5.7
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +2
Query: 428 GAYENEG-NCRSLSWQNCAECSYHGSRVFNDSQRQAT--KDAGTISGLNVLRIINEPTAA 598
GA +N + SL W C + YHG +V + A AG S NV+R + P A
Sbjct: 512 GATQNANESLNSLVWARCPKHKYHGYKVIRCAVAAAVCHFHAGASSRENVMRRLCVP-AG 570
Query: 599 AIAYGLDKKGTG 634
G K TG
Sbjct: 571 HTQEGHPSKRTG 582
>SB_28392| Best HMM Match : Exo_endo_phos (HMM E-Value=0.77)
Length = 549
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -3
Query: 619 VKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRVIEYAGTV 494
+K S R + VQ+ D CI+C L V+EYA V
Sbjct: 404 IKKASKRLYALRSLKKSGVQSNDLVCIYCVLIRAVLEYAAPV 445
>SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)
Length = 856
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 259 CVLGFIATWFLAASPMRRSVSVNAT*DGVVLLPWSLAMISTFPCWKTPTQEYVVPRSIPT 80
C+L I WF P+R S + VV+ S+ ++ F C P + P +IP+
Sbjct: 107 CLLLTIERWFAVVQPLRYQASFSKR--RVVVSLISVYCVACFLCCTLPFEVSFSPENIPS 164
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 348 VXRGKPKIKVAYKGEDKTFYPEEVSSMVLTKMKET 452
+ RGKPK +V + +DK P S++V+ +M +T
Sbjct: 4629 IVRGKPKPEVKWSKDDKPLTPN--SNIVMEEMDDT 4661
>SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)
Length = 2182
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 482 ECSYHGSRVFNDSQRQATKDAG-TISGLNVLRI 577
ECS+ GS+V N S+R DAG ++G++ RI
Sbjct: 678 ECSF-GSKVINSSKRITIYDAGFQVTGISPSRI 709
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,866,455
Number of Sequences: 59808
Number of extensions: 500799
Number of successful extensions: 1415
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -