Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00108
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 2.0
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 27 2.7
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 27 3.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.7
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 4.7
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 26 6.2
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 8.2
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 25 8.2
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 25 8.2
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 27.5 bits (58), Expect = 2.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 358 CSAGRVCEINEHGDAMCNCIKDC 426
C+A R+C++ E C+ DC
Sbjct: 974 CTASRICKVREIASLSLTCLLDC 996
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = +2
Query: 311 MKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRI 490
+K W + S A+Q S T A R P Q D+W ++ P + I
Sbjct: 124 LKENIREWSSKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSI 183
Query: 491 AKY 499
++Y
Sbjct: 184 SQY 186
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 529 LISAVVRNTTTFKSSITERAEKCLTALKARCLTSPV 636
LI + +N T F + E+ CL LK + + SP+
Sbjct: 82 LIELLQKNHTIFPFELCEKIVLCLVLLKNKTVISPI 117
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 4.7
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Frame = +2
Query: 275 LTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTR---QTP 445
L + S S T S T A S + +++ S N+ T S ++ + TP
Sbjct: 195 LASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTP 254
Query: 446 ----DAWCAQTSTKPGNRIAKYTASMLMP 520
++ A TS + A+Y S L+P
Sbjct: 255 LTSSNSTTAATSASATSSSAQYNTSSLLP 283
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 715 PSSGNEGSALYVSAMSRMMLKSQSRMRRGKSDISLSVQSGISRHVP 578
PSS + +++ + + + KS + SD++ S Q+G H P
Sbjct: 672 PSSKEKSGSMFFNTLRTVKDKSHVHDTQRSSDVNFSRQNGTRSHSP 717
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 155 TERPTSEQLGRGDISEAEHIEHGMSES-LDEKR 250
TE+ E + RG+IS++E +H + + L EK+
Sbjct: 163 TEKQRKEAIARGEISDSEDEKHTVKQKPLREKK 195
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 8.2
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Frame = +2
Query: 134 PQIRTTTTERPTSEQLGRGDISEAEHIEHGMSESLDEKRYLRQK*PELTTFSTRSLMKRM 313
P +TE+P L +S + H++ + S + Y + P S+ S +
Sbjct: 216 PPFPRESTEKPL---LSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSS 272
Query: 314 KTKKSTWKTLA*KSTAAQDVSAKSTN----TETPCVTASRTV---------PTRQTPDAW 454
+T K+T + + + VS+KST+ + +P + +T+ P TP
Sbjct: 273 QTVKTTTSNASRQPSPL--VSSKSTDNIIRSHSPVLLTPQTLSTSETKHIRPNNSTPYQR 330
Query: 455 CAQTSTKP 478
A+TSTKP
Sbjct: 331 RAETSTKP 338
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 438 CLVGTVLDAVTHGVSVFVDFADT-SC 364
CL+ + LD +T G+S F++ D SC
Sbjct: 265 CLITSHLDTLTKGISQFIEKRDAHSC 290
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -3
Query: 303 IRDLVEKVVNSGYFCLRYRFSSKLSDIPCSMCSASEMSPRP 181
+R ++EK + FC+ + +K+S S C+ P P
Sbjct: 140 LRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLP 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,507
Number of Sequences: 5004
Number of extensions: 50742
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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