Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00108
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0627 + 30463452-30463774,30463841-30463956,30464125-304643... 35 0.056
02_01_0330 + 2325504-2325739,2326749-2327622 33 0.30
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 30 2.1
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962... 30 2.1
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240... 30 2.1
01_01_0178 + 1514878-1515417 29 2.8
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335... 29 3.7
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 4.9
03_03_0196 + 15331604-15331646,15332141-15332260,15334106-153342... 29 4.9
03_02_0520 + 9092020-9092079,9092253-9093047 29 4.9
11_06_0344 + 22540436-22540737,22541304-22543545 28 6.4
03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470... 28 6.4
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 8.5
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 28 8.5
10_01_0256 - 2688172-2688786,2690779-2690857,2691567-2691652,269... 28 8.5
06_01_0985 - 7646772-7647451,7647957-7648107 28 8.5
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576... 28 8.5
04_03_0094 - 11113279-11114469 28 8.5
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431 28 8.5
02_04_0060 - 19345316-19345453,19345718-19345849,19345937-193460... 28 8.5
>02_05_0627 +
30463452-30463774,30463841-30463956,30464125-30464371,
30464458-30464555,30465216-30465284,30465752-30465820,
30465913-30466028
Length = 345
Score = 35.1 bits (77), Expect = 0.056
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +2
Query: 29 HIETHHRKAR*RVFLRWPS*SRSFAPPTLVYAA*APQIR--TTTTERPTSEQLGRGDISE 202
H+ H R+ R R FLR S + S +PP L A+ P ERP + G G++S
Sbjct: 34 HLSPHTRRRRQRRFLRLASAAAS-SPPPLPAASAQPHCSRWVVVMERPPA-PAGGGEVSR 91
Query: 203 AEHIEH 220
AE ++H
Sbjct: 92 AEAVDH 97
>02_01_0330 + 2325504-2325739,2326749-2327622
Length = 369
Score = 32.7 bits (71), Expect = 0.30
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Frame = +1
Query: 412 CIKDCPYETDSRRMVCTNFNETWQSDCEVYRQHAYASTTLISAVVRNTTTFKSSITERAE 591
C D P ++ C T++ + + Q T LI + V N T ++E +
Sbjct: 156 CNADAPQFIPRIKIYCETRKATYEGRKQNFVQTGELITELIKSSVDNPTEVLDLLSEDIK 215
Query: 592 KCLTALKARCLT---SPVACGTGFLTSCATWLKRRELTPHYL 708
L+ LK L+ P CG L + + L+R +P YL
Sbjct: 216 DKLSMLKNPDLSHDADPRQCGVYILVNHPSMLRREMQSPFYL 257
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +2
Query: 137 QIRTTTTERPTSEQLGRGDISEAEH-IEHGMSESLDEKRYLRQK*PELTTFSTRSLMKRM 313
Q R T P +E + A+H I++G++ + ++ R + ST
Sbjct: 325 QRRAGTVLPPPAEDFSYSAVVAAKHPIKNGITNTANQSRLSPPN--SSSGRSTLPPAASW 382
Query: 314 KTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKP 478
+ +T A ++Q ++ T+ ++ ++S TV + + P +W TST P
Sbjct: 383 GHRDLNTRTTATGVASSQSLTKSKTDPQSNSFSSSSTVSSTKLPSSWNDDTSTVP 437
>08_01_0961 -
9622444-9622928,9623011-9623102,9623862-9624002,
9624460-9624506,9624581-9624639,9624780-9624940,
9625021-9625196,9625284-9625355,9625820-9625879,
9625997-9626191
Length = 495
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +1
Query: 511 AYASTTLISAV--VRNTTTFKSSITERA-EKCLTALKARCLTSPVACGTGFLTSCATWL 678
+Y S L+S V R K+S++ + C L C S CG F T CA +L
Sbjct: 290 SYLSLPLMSIVKIARECGWRKTSVSSVCHDPCAICLDTECTVSAEGCGHEFCTKCALYL 348
>07_03_1764 +
29322683-29323387,29323809-29323889,29323968-29324072,
29324453-29325382,29326728-29326856,29326953-29327042,
29327237-29327293,29327362-29327394
Length = 709
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +3
Query: 411 LHQGLSLRDRLQTHGVHKLQRNLA---IGLRSIPPACLCLDNSDQCRGPQYH--HVQIEY 575
L G R +L T H+L+ N + +G P LCL S CRG H V+ +
Sbjct: 625 LPAGCPCRGQLLTMD-HRLEENASGGEVGPLGCWPGGLCLSRSIGCRGAISHVDQVKRQR 683
Query: 576 YGTCREMP 599
+ CR++P
Sbjct: 684 HAGCRDLP 691
>01_01_0178 + 1514878-1515417
Length = 179
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 480 AIGLRSIPPACLCLDNSDQCRGPQYHHVQIE 572
A+ RS+PP C C D C G VQ+E
Sbjct: 124 AVCTRSMPPTCSCQDKVKSCSGGCGKCVQVE 154
>09_04_0330 +
16731390-16731699,16731774-16732080,16732182-16733561,
16734064-16734112
Length = 681
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 349 KVHCSAGRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQ 483
K +A VCE + G+ + +C + D RM C + E WQ
Sbjct: 602 KEEAAAAAVCEGSGGGERVVDCACGA-VDDDGERMACCDICEAWQ 645
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 544 VRNTTTFKSSITERAEK-CLTALKARCLTSPVACGTG 651
+RN + + S+ E + C++ K + LT+PVA G G
Sbjct: 400 IRNLNSHQESLEESSSADCISPTKRKALTAPVAKGLG 436
>03_03_0196 +
15331604-15331646,15332141-15332260,15334106-15334221,
15334661-15334749,15334885-15334927,15335567-15335741,
15335840-15335971,15336046-15336383,15336791-15337129,
15337293-15337975,15338228-15338807,15339356-15339679,
15340149-15340262
Length = 1031
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 504 PACLCLDNSDQCRGPQYHHVQIEYYGTCREMPDCTESEMSDFPRRMRD 647
PA + D S +C P++ ++ +Y TC C SE+ +F R D
Sbjct: 494 PAEVLADGSLRCYAPEHQSGRVPFYVTCSNRIAC--SEVREFEYRDSD 539
>03_02_0520 + 9092020-9092079,9092253-9093047
Length = 284
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -2
Query: 220 VLDVFSLRDVPAAELLRRWTFSSR 149
VLD+ +++ +PA +L+RWT +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 559 TFKSSITERAEKCLTALKARCLTSP 633
T +S ERAE+C + L RC+ P
Sbjct: 299 TLQSGFEERAEECFSQLVQRCIIRP 323
>03_01_0643 -
4708245-4708355,4708456-4708800,4709124-4709700,
4709780-4710462,4710618-4710980,4712199-4712530,
4712856-4713048,4713748-4713790,4713964-4714052,
4714186-4714301,4714816-4714935,4715538-4715577
Length = 1003
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +3
Query: 504 PACLCLDNSDQCRGPQYHHVQIEYYGTCREMPDCTESEMSDFPRRMRD 647
PA + D++ C P + ++ +Y TC C+E DF + D
Sbjct: 460 PAEIIADDTLVCHSPSHKPGRVPFYVTCSNRLACSEVREFDFRPQYMD 507
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = -3
Query: 405 HGVSVFVDFADTSCAAVDF------QARVFHVDFFVFILFIRDLVEKVVNSGYF 262
HG+ V +FAD S V++ + V+ F + FIR+L E + S F
Sbjct: 984 HGIGVQFEFADASVHIVNYLMSKSSNGALSRVNMFAMLQFIRNLTENNLTSVNF 1037
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 27.9 bits (59), Expect = 8.5
Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Frame = +2
Query: 137 QIRTTTTERPTSEQLGRGDISEAEH-IEHGMSESLDEKRYLRQK*PELTTFSTRSLMKRM 313
Q R T P +E + A+H I++G++ + ++ R + ST
Sbjct: 268 QRRAGTVLPPPAEDFSYSAVVAAKHPIKNGITNTANQSRLSPPN--SSSGRSTLPPAASW 325
Query: 314 KTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKP 478
+ +T A ++Q ++ + ++ ++S TV + + P +W TST P
Sbjct: 326 GHRDLNTRTTATGVASSQSLTKSKADPQSNSFSSSSTVSSTKLPSSWNDDTSTVP 380
>10_01_0256 -
2688172-2688786,2690779-2690857,2691567-2691652,
2693046-2693113,2695175-2695244,2696191-2696320,
2696924-2697906
Length = 676
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -3
Query: 186 RPSCSDVGRSVVVVRICGAYAAYTSVGGANDRDH-EGQRKKTLHLAF 49
R CSD + + ++ +C Y + RDH G +TL F
Sbjct: 409 RADCSDKSQKLGIIPLCPLLLPYAVAAAGDQRDHRSGSFSQTLAAVF 455
>06_01_0985 - 7646772-7647451,7647957-7648107
Length = 276
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 220 VLDVFSLRDVPAAELLRRWTFSSR 149
VLDV +++ +P +L+RWT +R
Sbjct: 240 VLDVMNIKSLPKRYILKRWTREAR 263
>05_06_0246 +
26656629-26656907,26657001-26657228,26657595-26657630,
26658362-26658475,26658562-26659167
Length = 420
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 243 SSKLSDIPCSMCSASEMSPRPSCSDVG 163
S+ SD PC + SAS S P+ SD G
Sbjct: 310 SASSSDFPCDVSSASTSSATPARSDGG 336
>04_03_0094 - 11113279-11114469
Length = 396
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -3
Query: 552 IADHGTDQSCRGISMLAVYFAIRLPGFVEVCAHHASGVCL 433
IAD +Q C + L V + RL F +C HHAS V L
Sbjct: 211 IADLTLEQ-CPSVKRLVVA-SPRLDSFAMICCHHASHVVL 248
>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
Length = 370
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 220 VLDVFSLRDVPAAELLRRWTFSSR 149
VLD+ ++ +PA +L+RWT +R
Sbjct: 196 VLDLMNIESLPAQYILKRWTREAR 219
>02_04_0060 -
19345316-19345453,19345718-19345849,19345937-19346005,
19346453-19346551,19346702-19346786,19346890-19346990,
19347294-19347362,19347635-19347675,19348343-19348458,
19348546-19348702,19349266-19349474,19349811-19349914,
19350234-19350381,19350463-19350761,19350844-19351377
Length = 766
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 170 SEQLGRGDISEAEHIEHGMSESLDEKRYL 256
+E L RG + H +HG E+LDEKR L
Sbjct: 588 TEYLSRGSLYRILH-KHGARENLDEKRRL 615
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,928,578
Number of Sequences: 37544
Number of extensions: 411365
Number of successful extensions: 1293
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -