Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00108
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64670.1 68414.m07331 hydrolase, alpha/beta fold family prote...    33   0.25 
At1g05310.1 68414.m00538 pectinesterase family protein contains ...    30   1.3  
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr...    28   5.4  
At2g45290.1 68415.m05637 transketolase, putative strong similari...    28   7.1  
At5g64220.1 68418.m08067 calmodulin-binding protein similar to a...    27   9.4  
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei...    27   9.4  
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei...    27   9.4  
At3g09000.1 68416.m01053 proline-rich family protein                   27   9.4  
At1g48650.1 68414.m05445 helicase domain-containing protein cont...    27   9.4  

>At1g64670.1 68414.m07331 hydrolase, alpha/beta fold family protein
           low similarity to
           2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
           [Pseudomonas putida] GI:2822275; contains Pfam profile
           PF00561: hydrolase, alpha/beta fold family
          Length = 469

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = -3

Query: 318 VFILFIRDLVEKVVNSGYFCLRYRFSSKLSDIPCSMCSASEMSPRPSCSDVGRSVVVVRI 139
           VF+ FI D+V+ ++   Y  L + F S+    PC  C   E  P  +  + G  ++V   
Sbjct: 13  VFVFFILDIVDFLLCFTYKTLDFFFESEWK--PCYCCPPPEAKPISAGGNRGGKMIVSER 70

Query: 138 CGAYAAYTSV 109
            G Y+   S+
Sbjct: 71  SGDYSKVVSL 80


>At1g05310.1 68414.m00538 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 393

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 207 SASEMSPRPSCSDVGRSVVVVRICGAYAAYTSVG--GANDRDHE 82
           S   ++P P   DVG   V +RI G  +A+   G  GA D  H+
Sbjct: 184 SFMNVAPIPKPGDVGAQAVAIRIAGDESAFVGCGFFGAQDTLHD 227


>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
           protein (PEX10) identical to zinc-binding peroxisomal
           integral membrane protein GI:4337011 from [Arabidopsis
           thaliana]
          Length = 381

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = +1

Query: 550 NTTTFKSSITERAEKCLTALKARCLTSPVACGTGFLTSC-ATWLKRRELTP 699
           N +T  S+ TE   KC   L  R   +   CG  F  SC   W   ++  P
Sbjct: 312 NWSTSDSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWCNEKQECP 362


>At2g45290.1 68415.m05637 transketolase, putative strong similarity
           to transketolase 1 [Capsicum annuum] GI:3559814;
           contains Pfam profiles PF02779: Transketolase, pyridine
           binding domain, PF02780: Transketolase, C-terminal
           domain, PF00456: Transketolase, thiamine diphosphate
           binding domain
          Length = 741

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
 Frame = -3

Query: 654 KASPACDGGSQ---TSRFQCSQAFLGTFRNTRFE----RGGIADHGTDQSCRGISMLAVY 496
           KA P   GGS    +S     +AF G F+    E    R G+ +HG    C GI      
Sbjct: 446 KAVPGFLGGSADLASSNMTMLKAF-GNFQKATPEERNLRFGVREHGMGAICNGI------ 498

Query: 495 FAIRLPGFVEVCA 457
            A+  PGF+  CA
Sbjct: 499 -ALHSPGFIPYCA 510


>At5g64220.1 68418.m08067 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from[Nicotiana tabacum]
          Length = 1050

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 504 PACLCLDNSDQCRGPQYHHVQIEYYGTCREMPDCTESEMSDF 629
           PA + +D    C  P +   ++ +Y TC +   C+E    DF
Sbjct: 506 PADILVDGVLCCHAPPHEVGRVPFYITCSDRFSCSEVREFDF 547


>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 189 PRPSCSDVGRSV-VVVRICGAYAAYTSVGGANDRDHEG 79
           P PSC +V  +  V    CGA A   +  GANDR   G
Sbjct: 91  PNPSCGNVNFARRVECNKCGALAPSGTSSGANDRGGGG 128


>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 189 PRPSCSDVGRSV-VVVRICGAYAAYTSVGGANDRDHEG 79
           P PSC +V  +  V    CGA A   +  GANDR   G
Sbjct: 91  PNPSCGNVNFARRVECNKCGALAPSGTSSGANDRGGGG 128


>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 89  SRSFAPPTLV-YAA*AP-QIRTTTTERPTSEQLGRGDISEAEHIEHGMSE 232
           SR + PP +  ++  AP  +RTT  +RP S   GR  ++ A     G  E
Sbjct: 292 SRPWKPPEMPGFSLEAPPNLRTTLADRPVSASRGRPGVASAPGSRSGSIE 341


>At1g48650.1 68414.m05445 helicase domain-containing protein
           contains similarity to DEIH-box RNA/DNA helicase
           [Arabidopsis thaliana] GI:5881579; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain, PF00035:
           Double-stranded RNA binding motif
          Length = 1197

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 98  MTAITRANARRPFILPFDDAFLCEAGGSR 12
           MT +   + R PF++PFD   L E   S+
Sbjct: 810 MTVVAGLSVRDPFLMPFDKKDLAETARSK 838


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,936,128
Number of Sequences: 28952
Number of extensions: 295382
Number of successful extensions: 839
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)