Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00107
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 116 2e-27
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 56 5e-09
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 39 8e-04
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 34 0.023
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 33 0.053
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 32 0.070
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 31 0.12
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 31 0.21
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 31 0.21
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 30 0.28
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 30 0.28
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 30 0.28
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 30 0.37
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.49
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 29 0.65
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 29 0.86
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 29 0.86
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 29 0.86
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 28 1.1
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 28 1.1
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 28 1.1
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 28 1.5
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 28 1.5
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.0
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 27 2.0
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 2.0
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 27 2.6
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 27 2.6
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 27 2.6
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 27 2.6
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 27 2.6
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.6
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 27 3.5
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|... 26 4.6
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 6.0
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 6.0
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 26 6.0
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 26 6.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.0
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 8.0
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 25 8.0
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 116 bits (280), Expect = 2e-27
Identities = 45/68 (66%), Positives = 61/68 (89%)
Frame = +2
Query: 503 EQFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFQVRV 682
++FAVGSGAR+IS+CYFE+EN+WWVSKH+K+P+RST+ S+DWHPNN+LL AG AD + V
Sbjct: 113 DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYV 172
Query: 683 FSAYIKDI 706
SAY++D+
Sbjct: 173 LSAYVRDV 180
Score = 110 bits (264), Expect = 2e-25
Identities = 47/86 (54%), Positives = 60/86 (69%)
Frame = +3
Query: 264 NEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWAT 443
N+V +Y+++GN WK +HD V +DWAP +NRIVTCS DRNAYV+ + DG W
Sbjct: 33 NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92
Query: 444 TLVLLRINRAATCVKWSPMENNLLSG 521
TLVLLR+NRAAT V+WSP E+ G
Sbjct: 93 TLVLLRLNRAATFVRWSPNEDKFAVG 118
Score = 32.7 bits (71), Expect = 0.053
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Frame = +3
Query: 213 MSCMEQG*KSNCILPNNNEVHIY---KKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVT 383
++C++ KSN I+ + + + Y K+ WKQT L+ + + W+PN ++
Sbjct: 58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAV 117
Query: 384 CSVDRNAYVWTQGDDGKWATTLVLLR-INRAATCVKWSPMENNLL 515
S R V + W + L R + + W P NN+L
Sbjct: 118 GSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP--NNVL 160
Score = 31.5 bits (68), Expect = 0.12
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 279 YKKEGNDWKQTNNLVEHDLR--VMGIDWAPNTNRIVTCSVDRNAYV 410
Y ++ NDW + +L + LR ++ +DW PN + DR AYV
Sbjct: 128 YFEQENDWWVSKHL-KRPLRSTILSLDWHPNNVLLAAGCADRKAYV 172
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +2
Query: 551 FEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFQVRVF 685
+E++ N W VT +DW P + +V S D V+
Sbjct: 38 YEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY 82
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 56.0 bits (129), Expect = 5e-09
Identities = 28/84 (33%), Positives = 44/84 (52%)
Frame = +3
Query: 270 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 449
V I +K +DW+ T L H+ V I W+ N N + TCS D++ ++W +D ++
Sbjct: 358 VSINEKIDDDWECTAALEGHENEVKCIAWSCNGNYLATCSRDKSVWIWEATEDDEFDCLA 417
Query: 450 VLLRINRAATCVKWSPMENNLLSG 521
VL + V W P E+ L+SG
Sbjct: 418 VLQEHTQDVKVVTWHPTEDLLVSG 441
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +3
Query: 261 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWA 440
+N + ++ +G+DW T L H V + ++PN N + + D N ++W + +
Sbjct: 444 DNSICFWRDDGDDWALTCQLQGHTNTVWALAFSPNGNTLASADNDGNVFLWIKISSNEDV 503
Query: 441 TTLVLLRINRAATCVKW 491
T+ I R A +W
Sbjct: 504 ATIDSTNILRPALQEEW 520
Score = 33.1 bits (72), Expect = 0.040
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +3
Query: 318 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATTLVLLRINRAATCVKWS 494
L EH V + W P + +V+ S D + W GDD WA T L + +S
Sbjct: 419 LQEHTQDVKVVTWHPTEDLLVSGSYDNSICFWRDDGDD--WALTCQLQGHTNTVWALAFS 476
Query: 495 PMENNLLS 518
P N L S
Sbjct: 477 PNGNTLAS 484
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 611 VTSIDWHPNNILLVAGSAD 667
V + WHP LLV+GS D
Sbjct: 426 VKVVTWHPTEDLLVSGSYD 444
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 38.7 bits (86), Expect = 8e-04
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Frame = +3
Query: 294 NDWKQTNNLVEHDLRVMGIDWAPNTNR----IVTCSVDRNAYVWTQGDDGKW-ATTLVLL 458
N+W + L H + WAP+ + + S D+N ++WT+ DG W T L
Sbjct: 193 NNWILEDTLAGHVDWTRDVAWAPSVGLTKTYLASASQDKNVFIWTKEGDGPWQKTPLTEE 252
Query: 459 RINRAATCVKWSPMENNLLS 518
+ A V WS + N+L+
Sbjct: 253 KFPDIAWRVSWS-LSGNILA 271
Score = 31.9 bits (69), Expect = 0.092
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Frame = +3
Query: 261 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNT-NRIVTC-SVDRNAYVWTQGDDGK 434
+ V ++++ G W + + H V + WAP+ ++ C S D V DDG
Sbjct: 76 DGHVIVWRETGGVWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVSVLEFKDDGS 135
Query: 435 WATTLVLLRINRAATCVKWSP 497
T + V WSP
Sbjct: 136 -CDTRIFTAHEPGCNAVCWSP 155
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 33.9 bits (74), Expect = 0.023
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 315 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
NL H L V+ +D + ++ +VTCS D+N +W
Sbjct: 571 NLYGHKLPVLSMDISYDSKLLVTCSADKNVKIW 603
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 315 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLR 461
++ H +M + + P+T TCS DR W DGK ++ LR
Sbjct: 613 SIFAHQDSIMEVTFQPDTYNFFTCSKDREVRYW----DGKSFDLILKLR 657
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 32.7 bits (71), Expect = 0.053
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 318 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATT 446
L+ H+ VM +DW P I++ S D + VW + G W T
Sbjct: 264 LMGHEDWVMSVDWHPTKEMILSSSADSSMIVWEPDTNTGIWVVT 307
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 611 VTSIDWHPNNILLVAGSADFQVRVF 685
V S+DWHP ++++ SAD + V+
Sbjct: 271 VMSVDWHPTKEMILSSSADSSMIVW 295
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 276 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ-GDDGKW 437
++K++ W Q ++ H V G+ W P ++ D+ ++ + D W
Sbjct: 352 LWKQDAGQWLQLPSISGHTKSVKGVAWDPEGKFYLSAGTDQTTRLFARFKKDNAW 406
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +3
Query: 255 PNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 428
P + + +Y E W Q L H L V I ++P+ I++ DR + Q ++
Sbjct: 555 PEHAVIRLY--ETQSWNQQQVLKGHSLTVTTIKFSPDDRYILSAGRDRLVCLHEQAEN 610
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 32.3 bits (70), Expect = 0.070
Identities = 20/87 (22%), Positives = 37/87 (42%)
Frame = +3
Query: 267 EVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATT 446
+V+++ E N+++ N +H +P+ I SVD VW D K +
Sbjct: 82 DVYVWNPETNEFRDLGNNAQHPSECWSSCISPDGQTIAFTSVDGRIAVWDNPSDCKISE- 140
Query: 447 LVLLRINRAATCVKWSPMENNLLSGQE 527
L + C+ +SP ++SG +
Sbjct: 141 --LDTKGKFGLCIDYSPNGRFIVSGHQ 165
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/71 (21%), Positives = 31/71 (43%)
Frame = +3
Query: 318 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 497
L H+ V+ ++++PN + +C D+ +W + K +L+ + CV+W P
Sbjct: 217 LAAHNGVVLCVNYSPNGVFLASCGRDKTIRIWDSTSNKK--KSLITINNVSPLNCVRWRP 274
Query: 498 MENNLLSGQEL 530
+L
Sbjct: 275 ANQQSRGSNQL 285
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 30.7 bits (66), Expect = 0.21
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 324 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 428
EH+L +G+ W+ N+ + S D+N YVW+ D
Sbjct: 269 EHNL--LGVAWSRNSRFVGAGSSDKNVYVWSATGD 301
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 30.7 bits (66), Expect = 0.21
Identities = 17/78 (21%), Positives = 36/78 (46%)
Frame = +3
Query: 270 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 449
+ +YK +G T + HD ++ + + + ++T S D +W++GD G + L
Sbjct: 369 LRVYKVDGKAPVSTVSHA-HDNSIVALRYNLRISLLLTASSDTTVKLWSRGDAGAF-ECL 426
Query: 450 VLLRINRAATCVKWSPME 503
+ + C+ W+ E
Sbjct: 427 HVFSFSSPVNCIDWNLRE 444
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 30.3 bits (65), Expect = 0.28
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 303 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 416
K +L H+ +V +DW+P+ R+ + D+ +W+
Sbjct: 464 KMKFDLPGHEDQVFAVDWSPDGQRVASGGADKAVRIWS 501
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 611 VTSIDWHPNNILLVAGSADFQVRVFS 688
V ++DW P+ + +G AD VR++S
Sbjct: 476 VFAVDWSPDGQRVASGGADKAVRIWS 501
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 30.3 bits (65), Expect = 0.28
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +3
Query: 261 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
+++V IY+ + L EH V+ ++W+ + ++ + SVD++A V+
Sbjct: 51 DSKVRIYEVQATGQSIGKALYEHQGPVLSVNWSRDGTKVASGSVDKSAKVF 101
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 30.3 bits (65), Expect = 0.28
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 282 KKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
+K +W+ L+ HD + + W+ ++ +V+ +D + VW
Sbjct: 118 EKHTENWRSYRRLLGHDNDIQDLCWSYDSQLVVSVGLDSSIIVW 161
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 29.9 bits (64), Expect = 0.37
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +3
Query: 276 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
+Y +G Q + H + I W+P++++ VT S + +W
Sbjct: 213 VYVFDGKTGDQVYEIDAHKGSIFSISWSPDSSQFVTSSAGYSCKIW 258
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +3
Query: 258 NNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 437
++N ++ + G ++ +L H V + ++PN R + D YV+ DGK
Sbjct: 167 DDNSINFF--HGTPYRFNRSLRVHSKFVYDVRYSPNDERFASAGADGKVYVF----DGKT 220
Query: 438 ATTLVLLRINRAAT-CVKWSP 497
+ + ++ + + WSP
Sbjct: 221 GDQVYEIDAHKGSIFSISWSP 241
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.49
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 303 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
K+ L+ H V I W+P+ +++CS D++ +W
Sbjct: 246 KRVFRLIGHIDTVAYIRWSPDDRYLLSCSCDKSVILW 282
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 29.1 bits (62), Expect = 0.65
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 327 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 416
H VMG+ TN + +CS DR+ VW+
Sbjct: 249 HRDAVMGLAMRRGTNEMFSCSADRSIKVWS 278
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 28.7 bits (61), Expect = 0.86
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +2
Query: 512 AVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFQVRVFS 688
A S + I I FEK S K + V+SID++P LLV+GS D VR+++
Sbjct: 112 ASASDDKTIRIWDFEKR----CSVRCLKGHTNYVSSIDFNPLGTLLVSGSWDETVRIWN 166
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 28.7 bits (61), Expect = 0.86
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 318 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
L EH +++ + W+PN ++ T S D +W
Sbjct: 345 LDEHIRQIVAMAWSPNGYQLATSSADDTVKIW 376
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 28.7 bits (61), Expect = 0.86
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 611 VTSIDWHPNNILLVAGSADFQVR 679
V ++DWHP+ LL +GS D V+
Sbjct: 209 VKTVDWHPSKGLLASGSKDNLVK 231
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 327 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
H++ V + ++PN ++ VT S D + VW
Sbjct: 163 HEMEVRDVAFSPNDSKFVTASDDGSLKVW 191
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 294 NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ 419
N+ Q ++L+ H V G+ +P I++CS D +W++
Sbjct: 391 NEPLQKSSLIGHTRPVFGVSISPQKEFILSCSEDGFTRLWSK 432
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +3
Query: 360 PNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL-LRINRA-----ATCVKWSPMENNL 512
P +N IVTCS D ++W + + T+ L +++ + ATC+ + P ENN+
Sbjct: 303 PPSNNIVTCSTDGLVHIWEPDMFSRPSETICLSSQVDSSSQCIPATCLSFIP-ENNM 358
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 452 NKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPH 342
NK S I SLSP ++ + N ++ +G+ +NPH
Sbjct: 408 NKESIKQRIPSLSPPITRSYNAKHRPSLVLGTSVNPH 444
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 327 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAAT-CVKWSPME 503
H+ + G+ W + ++ + D N +VW D + + L + AA + WSP +
Sbjct: 248 HEQEICGLQWDRSLGQLASGGNDNNLFVW----DYRSSRPLHKFEEHTAAVKAIGWSPHQ 303
Query: 504 NNLLS 518
+L+
Sbjct: 304 RGILA 308
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 348 IDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWS 494
+DW+ N N +V +++RN YVW D G + L + VKWS
Sbjct: 186 LDWS-NLN-VVAVALERNVYVW-NADSGS-VSALAETDESTYVASVKWS 230
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/71 (23%), Positives = 26/71 (36%)
Frame = +3
Query: 306 QTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCV 485
Q L H V G+ W + ++ + D +W D N A V
Sbjct: 296 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW---DARSSIPKFTKTNHNAAVKAV 352
Query: 486 KWSPMENNLLS 518
W P ++NLL+
Sbjct: 353 AWCPWQSNLLA 363
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -3
Query: 482 ASRCSVDTQKNKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPHHSKVVFH 321
A S T N + P PI +L PD T++ + ++ + +G+ PHHS + H
Sbjct: 142 ADNSSSSTTSNPNVAP-PISTL-PDPVATISSSSSSHLDMGAIHPPHHSSLPPH 193
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.5 bits (58), Expect = 2.0
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 494 SHGEQFAV-GSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADF 670
SH +F V GSG R + ++ E + +K I + VT+I PN+ + GS D
Sbjct: 411 SHNGRFIVSGSGDRTARL--WDVETGQCI---LKLEIENGVTAIAISPNDQFIAVGSLDQ 465
Query: 671 QVRVFS 688
+RV+S
Sbjct: 466 IIRVWS 471
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 318 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 416
L+ H V G ++P+ +++CS D +A +W+
Sbjct: 375 LLSHSGPVYGTTFSPDNKYLLSCSEDASARLWS 407
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 264 NEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPN 365
N+ +IYK+ + WK+ L H + I WAP+
Sbjct: 192 NDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPS 226
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 674 LGSQQSQRRAKCYWDANQ*MSQSNEWA 594
L ++S + +WDAN +SQ N+W+
Sbjct: 123 LREEKSDSGEQFHWDANVTLSQENKWS 149
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +3
Query: 318 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAAT-CVKWS 494
L H V G++W N N + + D VW + ++ L + AA + WS
Sbjct: 370 LTAHRQEVCGLEWNSNENLLASGGNDNALMVWDKFEE----KPLYSFHNHIAAVKAITWS 425
Query: 495 PMENNLLS 518
P + +L+
Sbjct: 426 PHQRGILA 433
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 590 KKPIRSTVTSIDWHPNNILLVAGSADFQVRVF 685
K P +V + WHPN +L G D +V+
Sbjct: 296 KLPHSDSVLTGSWHPNGNILATGGQDTTAKVW 327
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/42 (23%), Positives = 24/42 (57%)
Frame = +2
Query: 569 WWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFQVRVFSAY 694
+W K + + + S + + W ++ L+AG+ D +R++ A+
Sbjct: 117 YWKVKIVCRSMGSEIYDLCWSVDSNFLIAGAMDNSLRLYDAH 158
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 27.1 bits (57), Expect = 2.6
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = -3
Query: 404 SITVNRTRNNTVGVGSPINPHHSKVVFHKVVCLLPVISF----LFVYVNFIIVWENAI*L 237
+I ++T N V V I KV+ ++ LL + S L ++NF +++ I
Sbjct: 109 NILQDKTSVN-VNVNKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPFINFFLLYHQIILS 167
Query: 236 LSLFHA*HVIGAH 198
SLFH H+I H
Sbjct: 168 HSLFHISHLISFH 180
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +3
Query: 246 CILPNNNEVHIYKKEGNDWKQTNNLVEHDLRVM---GIDWAPNTNRIVTCSVDRNAYVW 413
C++ + N+VH+ W+ TN + ++ + + N I + S + YVW
Sbjct: 115 CVVTSKNQVHLLSLSKGSWEVTNTISCEKTPLLFCATVQISGNEIYIASASAFQQIYVW 173
>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 4.6
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = -3
Query: 329 VFHKVVCLLPVISFLFVYVNFIIVW 255
+FH V +L ++ + +++N++ VW
Sbjct: 245 IFHPVTYILAIVVPINIFLNYLFVW 269
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 327 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
H LR+ + + P N ++ S+D++ VW
Sbjct: 546 HSLRIYSVLYEPERNICISGSMDKSIRVW 574
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 413 PDVSITVNRTRNNTVGVGSPINPHHSKVVFHKVVCLLP 300
PD I R R+++ + I+PHHS+ + ++ +P
Sbjct: 472 PDSDICFTRRRSDSNRTWTVIDPHHSQSFDNDILAEIP 509
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 321 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 455
V H L ++ I + N + +DR VW D +W T LVL
Sbjct: 592 VHHQLDILKIAVSENYKTFASVGLDRCLVVW---DLRQWCTKLVL 633
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 548 YFEKENNWWVSKHIKKPIRSTVTSID 625
YF+++N W + K KK ++ ++TS+D
Sbjct: 30 YFDEDNIWDLDK-FKKNLKVSITSLD 54
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 611 VTSIDWHPNNILLVAGSAD 667
V SI WHPNN +A + D
Sbjct: 216 VNSIAWHPNNATRLATAID 234
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +2
Query: 602 RSTVTSIDWHPN--NILLVAGSADFQVRVFSAYIK 700
R+ + SI+WHPN +++ V G AD Q+ ++ ++
Sbjct: 387 RAPIYSIEWHPNEDSVIGVVG-ADNQISLWDLSVE 420
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 533 LISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFQVRVFSAYIKDI 706
LIS+ FE++ + ++ +R S + P +LLVAG D +V Y+K++
Sbjct: 229 LISVNRFERKKDIRLAIDAFSALRDL--SANRFPEYLLLVAGGYDIRVSENRRYLKEL 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,454
Number of Sequences: 5004
Number of extensions: 67243
Number of successful extensions: 264
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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