Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00107
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26293| Best HMM Match : WD40 (HMM E-Value=1.1e-15) 44 9e-05
SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32) 35 0.074
SB_20681| Best HMM Match : WD40 (HMM E-Value=3.1e-16) 35 0.074
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22) 32 0.52
SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22) 31 0.69
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 31 0.69
SB_55962| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_25971| Best HMM Match : Sushi (HMM E-Value=0.54) 31 0.91
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22) 31 1.2
SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_48808| Best HMM Match : DEAD (HMM E-Value=0.029) 30 2.1
SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27) 30 2.1
SB_22042| Best HMM Match : WD40 (HMM E-Value=6.1e-13) 30 2.1
SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23) 29 2.8
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 29 2.8
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_54574| Best HMM Match : WD40 (HMM E-Value=0) 29 3.7
SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006) 29 4.9
SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21) 29 4.9
SB_41443| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_30961| Best HMM Match : I-set (HMM E-Value=0) 28 6.4
SB_20916| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013) 28 6.4
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 28 6.4
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_26293| Best HMM Match : WD40 (HMM E-Value=1.1e-15)
Length = 140
Score = 44.4 bits (100), Expect = 9e-05
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +3
Query: 276 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPN----TNRIVTCSVDRNAYVWTQG-DDGKWA 440
++++ G W + L H V + WAPN T+ I +CS D +W++ ++G+
Sbjct: 20 MFRETGGQWVEEQKLEAHSDWVRDVAWAPNVGLPTSTIASCSQDCRVIIWSRNEEEGEGW 79
Query: 441 TTLVLLRINRAATCVKWSPMENNL 512
++ VL + N V WS N L
Sbjct: 80 SSKVLKKFNDVVWHVSWSVTGNIL 103
>SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32)
Length = 458
Score = 34.7 bits (76), Expect = 0.074
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 500 GEQFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNN-ILLVAGSADFQV 676
G + A GS R S+ +K+ HI K +V + WHP+N L V S D +
Sbjct: 45 GRRLASGSFDRTASVFVLDKDR--LTLDHIYKGHNESVDQLCWHPSNPDLFVTASGDKTI 102
Query: 677 RVFSAYI 697
R++ A I
Sbjct: 103 RIWDARI 109
>SB_20681| Best HMM Match : WD40 (HMM E-Value=3.1e-16)
Length = 91
Score = 34.7 bits (76), Expect = 0.074
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 324 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATT 446
+H + + + + R+ TCS D++ VW G+DG+W T
Sbjct: 10 DHKDLIHDVSYDFHGRRMATCSSDQSVKVWDLGEDGEWRCT 50
Score = 31.1 bits (67), Expect = 0.91
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 288 EGNDWKQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQ 419
E +W+ T N H V + WA P +++ +CS DR VW +
Sbjct: 43 EDGEWRCTANWKTHSGSVWKVTWAHPEFGQVLASCSFDRTVAVWEE 88
>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
Length = 874
Score = 31.9 bits (69), Expect = 0.52
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = +3
Query: 258 NNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
+ N + +Y ++ NL H+ +V + W+ + ++I++C +D Y W
Sbjct: 252 HGNVIQLYSS--TTFENVGNLKGHNGKVRQVIWSQDDSKIISCGMDGAVYEW 301
>SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22)
Length = 195
Score = 31.5 bits (68), Expect = 0.69
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 611 VTSIDWHPNNILLVAGSADFQ 673
V IDWHP+ LLV+GS D Q
Sbjct: 158 VKCIDWHPHKSLLVSGSKDSQ 178
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 31.5 bits (68), Expect = 0.69
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 327 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPME 503
H V +DW P TN + +CS+D + VW +G + A VKWSP
Sbjct: 203 HTSGVNRLDWNPVYTNLLASCSMDNSVRVWDTYLNGICVKSHTF--HGGAVKDVKWSPGG 260
Query: 504 NNLLS 518
LLS
Sbjct: 261 MQLLS 265
>SB_55962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 31.1 bits (67), Expect = 0.91
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +2
Query: 500 GEQFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFQVR 679
G+ +GS RL + + W SK + P T+TS+ W + LVAG+ V
Sbjct: 168 GQSVVIGSFDRLRVFNWSPRRGAWDESKAKEIPNLYTITSLAWKRDGSRLVAGTLCGGVE 227
Query: 680 VFSAYIK 700
+F ++
Sbjct: 228 LFDCCLR 234
>SB_25971| Best HMM Match : Sushi (HMM E-Value=0.54)
Length = 275
Score = 31.1 bits (67), Expect = 0.91
Identities = 19/84 (22%), Positives = 36/84 (42%)
Frame = +2
Query: 449 CSSAYQPSSDLREMVSHGEQFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDW 628
C + YQP S L E +SHG ++ + +R + + ++ ++ PIR +
Sbjct: 93 CQAGYQPVSRLCEGLSHGSRYVLRVSSRNGVTSFADGSAIRFIEVNVTLPIREALKVRTT 152
Query: 629 HPNNILLVAGSADFQVRVFSAYIK 700
+ N + V + V + S K
Sbjct: 153 YVNGNMAVLSWSSLNVTLLSTVCK 176
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = +3
Query: 312 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 491
N+L HD V GI + R+V+ S DR +W +A L + CV
Sbjct: 826 NSLDGHDGHVRGIAITSDGRRLVSASQDRTLRIWNL---ETFAHVSTLRGHSETVYCVCC 882
Query: 492 SPMENNLLSGQE 527
SP + +SG E
Sbjct: 883 SPDDKFAISGSE 894
>SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)
Length = 453
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +2
Query: 476 DLREMVSHGEQFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNN-ILLV 652
D+ S+GE+FA I + F+ + + + I R T+T+I W+P+N +L
Sbjct: 20 DVCSASSNGERFAY-CATLAIYVYEFDHQFSEYRLISILADHRKTITAIAWNPHNEDILA 78
Query: 653 AGSADFQVRVFS 688
+ AD +V ++S
Sbjct: 79 SAGADCRVLIWS 90
>SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Frame = +3
Query: 252 LPNNNEVHIYK----KEGNDWKQTNNL---VEHDLRVMGIDWAPNTNRIVTCSVDRNAYV 410
L N N + ++K K+G T V H ++ I A N I++CS D +
Sbjct: 166 LANGNTIRVFKVSKKKDGTGTTITGEFDFPVRHKAEIINIAVASNGKYIMSCSKDTTIII 225
Query: 411 WTQGDDGKWATTLVLLRINRA 473
W G+ TL L+IN +
Sbjct: 226 WDL--KGEVLATLDTLQINNS 244
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 608 TVTSIDWHPNN-ILLVAGSADFQVRVF 685
T+T+I WHP++ L AG +D Q+RV+
Sbjct: 295 TITAIAWHPSSRYLASAGGSDRQIRVW 321
>SB_48808| Best HMM Match : DEAD (HMM E-Value=0.029)
Length = 498
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 515 QQIVLHGRPFHASRCSVDTQKNKSSCPFPIISLSPDVSI 399
Q LHG H + V T SCPF I+ ++P++ +
Sbjct: 293 QAASLHGDMSHTQKQGVYTAIRDPSCPFKILYVTPEILV 331
>SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 300 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
W+ + L +H V+ + W+P+ + + + SVD +W
Sbjct: 78 WRCVHTLRQHSGDVLDLAWSPDDSFLASGSVDNTVTIW 115
>SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)
Length = 592
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = -3
Query: 542 LISI*LLTRQQIVLHGRPFHASRCSVDTQKNKSSCPFPIISLSPDVSITVNRTRNNTVGV 363
LI I ++ + ++ G P + + CP+ S SP V+ T RTR+ T+
Sbjct: 371 LIMIMVIDSRYLLFPGLPECHHSPATTNMRRAIMCPYAP-STSPRVTSTTFRTRHRTLSA 429
Query: 362 GSPINPHHSKVVFHKVVCL 306
+ S V H++ CL
Sbjct: 430 RFFSDVPESHVYVHRISCL 448
>SB_22042| Best HMM Match : WD40 (HMM E-Value=6.1e-13)
Length = 232
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/82 (24%), Positives = 33/82 (40%)
Frame = +3
Query: 249 ILPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 428
++ N+N++ +Y E D + H ++ +D + +IVT S D VW D
Sbjct: 152 VVTNSNQLRLYNLETLDCRMVEG---HSKMILCLDVCADGTKIVTGSKDHTVRVWDVSDC 208
Query: 429 GKWATTLVLLRINRAATCVKWS 494
V A + V WS
Sbjct: 209 SNPRCLAVGNGHTHAVSGVAWS 230
>SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23)
Length = 437
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 315 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
+L H L VM +D + ++ IVT S D+N +W
Sbjct: 241 SLYGHKLPVMAMDISSDSTLIVTGSADKNIKIW 273
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 252 LPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRI 377
L +NNEV + K D +NN VE+D + ID + N +
Sbjct: 1607 LVSNNEVELAKSTNIDKLVSNNEVEYDAKSTNIDKLVSNNEV 1648
Score = 29.1 bits (62), Expect = 3.7
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Frame = +3
Query: 252 LPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRI-VTCSVDRNAYVWTQGDD 428
L +NNEV + K D +NN E+D + ID + N + + S + + V G +
Sbjct: 1659 LVSNNEVELAKSTNIDKLVSNNEDEYDAKSTNIDKLVSNNEVELAKSTNIDKLVSNNGVE 1718
Query: 429 GKWATTLVLLRINRAATCVKWSPMENNLLSGQELD 533
+T + L N K S N L+S E++
Sbjct: 1719 LAKSTNIDKLVSNNEVELAK-STNINKLVSNNEVE 1752
Score = 29.1 bits (62), Expect = 3.7
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Frame = +3
Query: 252 LPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRI-VTCSVDRNAYVWTQGDD 428
L +NNEV + K D +NN E+D + ID + N + + S + + V G +
Sbjct: 1762 LVSNNEVELAKSTNIDKLVSNNEDEYDAKSTNIDKLVSNNEVELAKSTNIDKLVSNNGVE 1821
Query: 429 GKWATTLVLLRINRAATCVKWSPMENNLLSGQELD 533
+T + L N K S N L+S E++
Sbjct: 1822 LAKSTNIDKLVSNNEVELAK-STNINKLVSNNEVE 1855
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +3
Query: 324 EHDLRVMGIDWAPNT--NRIVTCSVDRNAYVWTQGDDG 431
EHD V + W+ N + +CS DR +W + G
Sbjct: 3103 EHDGPVWQVSWSHPMFGNLLASCSYDRKVIIWKESSSG 3140
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 252 LPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRI 377
L +NNEV + K D +NN VE+D + ID + N +
Sbjct: 1487 LVSNNEVVLAKSTNIDKLVSNNEVEYDAKSTNIDKLVSNNEV 1528
>SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 737
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 223 WNKDRSQIAFSQTIMKFTYTKRKEMTGSKQTTLWNTTLE 339
W K +S ++ QT + TKR +TG K T N T+E
Sbjct: 92 WRKGQSCVSNPQTRTHRSNTKRGVITGQKSNTRSNLTME 130
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = +3
Query: 288 EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 428
+ N W H + +DW N N +CS D+ +V G D
Sbjct: 215 DANTWDVKQQFAFHQAPTLDVDW-QNNNSFASCSTDKLIHVCRLGLD 260
>SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 255 PNNNEVHIYKKEG-NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
P ++E+ KKE N KQ H RV+G++ + + +VT S D + VW
Sbjct: 827 PPDDEMTEKKKEPKNVIKQVVCWRAHLTRVVGVEHVDSADAVVTASTDLSVRVW 880
>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1050
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 321 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
V H V ++P+ + V+CS DR VW
Sbjct: 591 VGHTQEVFSCSFSPDDTKAVSCSADRTVKVW 621
>SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006)
Length = 1103
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 321 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 425
V+ ++ +M I W+ +T+RI+T + +W+ G+
Sbjct: 545 VKGNVAIMSIQWSKDTSRILTLNSQGTVELWSVGN 579
>SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)
Length = 447
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 288 EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 428
+ N WKQ +L H L V I ++ + RI++ S DR+ V+ D
Sbjct: 235 DANIWKQVCSLPGHSLTVTQIAFSHSGQRILSVSRDRSWAVFRLRQD 281
>SB_41443| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 318 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ--GDDGKWATTLVLLRINRAAT-CVK 488
L +H V G+ W+P+ + + D +W G + +L L ++AA +
Sbjct: 287 LDKHTQEVCGLKWSPDGKYLASGGNDNLLNIWDANISASGISSNSLFCLSQHQAAVKALD 346
Query: 489 WSPMENNLLS 518
W P + N+L+
Sbjct: 347 WCPFQRNVLA 356
>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 273 HIYKKEGND---WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
HI E ++ W + L H V + W+P+ ++++ SVD +A +W
Sbjct: 158 HILDDENDNLETWTVSKMLRGHIEDVYDLAWSPDGTQLLSGSVDNSAIIW 207
>SB_30961| Best HMM Match : I-set (HMM E-Value=0)
Length = 1018
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -3
Query: 428 IISLSPDVSITVNRTRNNTV 369
I ++SPDVS+T+NRT + T+
Sbjct: 671 ITAISPDVSVTINRTDSVTL 690
>SB_20916| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)
Length = 507
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -3
Query: 491 PFHASRCSVDTQKNKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPHHSKVVFHKVV 312
P + S+ ++ + ++C F + L+ + +RT + + G PINPH ++ +V
Sbjct: 428 PPYISQSTLLGRNGSNACTFISLILAHSYITSASRT-SIQLSRGPPINPHWLSMMLSAIV 486
Query: 311 C 309
C
Sbjct: 487 C 487
>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
Length = 2269
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 148 EFKVK*KMAQTLTFGDSC---APITCHAWNKDRSQIAFSQTIMKFTYTK 285
+F+VK + + T SC H W+KDR + F + +K T TK
Sbjct: 1097 KFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKETQTK 1145
>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 318 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 416
+ +HD +++ W P V+ S DR A +WT
Sbjct: 1273 VAQHDDKMIQCRWHPFLMAFVSSSADRTARLWT 1305
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,377,572
Number of Sequences: 59808
Number of extensions: 502148
Number of successful extensions: 1367
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -