Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00107
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical ... 120 1e-27
AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical ... 45 5e-05
AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical... 37 0.012
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 36 0.028
Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical pr... 35 0.049
Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical pr... 34 0.086
AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical ... 33 0.26
AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore... 33 0.26
Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical pr... 32 0.35
U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated p... 32 0.35
AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein. 32 0.35
Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical pr... 32 0.46
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 32 0.46
Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical pr... 31 0.61
Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical pr... 31 0.61
Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical pr... 31 0.61
Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical pr... 31 0.61
U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated p... 30 1.4
U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical pr... 30 1.4
AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical... 30 1.4
AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical ... 30 1.9
U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical pr... 29 2.4
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr... 29 2.4
U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20 pr... 29 2.4
Z81523-5|CAB04240.2| 298|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF067942-4|AAG45573.2| 324|Caenorhabditis elegans Hypothetical ... 29 3.2
AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore... 29 4.3
Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical pr... 28 7.5
AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein. 28 7.5
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p... 27 9.9
Z79756-4|CAB02116.2| 478|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical p... 27 9.9
Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical p... 27 9.9
U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical pr... 27 9.9
U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical ... 27 9.9
>AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical
protein Y79H2A.6 protein.
Length = 368
Score = 120 bits (288), Expect = 1e-27
Identities = 48/67 (71%), Positives = 60/67 (89%)
Frame = +2
Query: 506 QFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFQVRVF 685
+FAVGSGA+L+S+CY+EKEN+WWVSK IKKPIRSTVT +DWH NN+LL GS DF+ RVF
Sbjct: 116 KFAVGSGAKLVSVCYYEKENDWWVSKQIKKPIRSTVTCLDWHSNNVLLAVGSCDFKCRVF 175
Query: 686 SAYIKDI 706
SAY+K++
Sbjct: 176 SAYVKEV 182
Score = 106 bits (255), Expect = 1e-23
Identities = 46/88 (52%), Positives = 60/88 (68%)
Frame = +3
Query: 258 NNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 437
++N++HI++ DW+ + L EHDL V G+DW TNRIV+CS D+NA+VWT D W
Sbjct: 34 SSNDIHIFEWRNGDWQSIHTLSEHDLPVTGLDWGTKTNRIVSCSQDKNAFVWT-FDKNVW 92
Query: 438 ATTLVLLRINRAATCVKWSPMENNLLSG 521
LVL+R NRAAT VKWSP+EN G
Sbjct: 93 KPELVLVRFNRAATYVKWSPLENKFAVG 120
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 205 PITCHAWNKDRSQIAFS 255
PITCHAWNKDR+QIA S
Sbjct: 16 PITCHAWNKDRTQIAVS 32
>AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical
protein Y18D10A.9 protein.
Length = 337
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/83 (25%), Positives = 43/83 (51%)
Frame = +3
Query: 270 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 449
V +Y++E ++ + N L H+ V ++ + + TCS D++ + W Q +D ++ +
Sbjct: 91 VVVYQQEDGEFAEVNKLEGHESEVKCAVFSKSDEFLATCSRDKSVWFWQQDEDEDFSVSS 150
Query: 450 VLLRINRAATCVKWSPMENNLLS 518
+L + V W P E+ L+S
Sbjct: 151 ILQPHTQDVKQVAWHPTEDLLVS 173
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 554 EKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFQVRVF 685
+++ ++ VS I +P V + WHP LLV+ S D +R +
Sbjct: 141 DEDEDFSVSS-ILQPHTQDVKQVAWHPTEDLLVSCSYDSSIRFY 183
>AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical
protein Y111B2A.17 protein.
Length = 778
Score = 37.1 bits (82), Expect = 0.012
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 294 NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ 419
++W + + ++ H L V I W P+ R++T S DR A ++T+
Sbjct: 596 SNWSKKSEIIGHQLTVTQIAWNPSGTRLLTVSRDRTAKLYTE 637
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 35.9 bits (79), Expect = 0.028
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 279 YKKEGNDWKQTN-NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 455
+K +D + N NL H + + W + +++ +C YVW + DD +W+ LV
Sbjct: 51 FKPTPDDLTRYNFNLRGHHNAIRMVTWNKSQSKLASCDASGIIYVWVRNDD-RWSVELVN 109
Query: 456 LRINRAATCVKWSPMENNLL 515
R + + + WSP + L
Sbjct: 110 DRGVKVSD-LSWSPCGGSAL 128
>Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical
protein K08F9.2 protein.
Length = 600
Score = 35.1 bits (77), Expect = 0.049
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +3
Query: 312 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 491
N+ H +V+ + W+P+ R+ T S+D + +W G+ + + V+W
Sbjct: 519 NSWTFHTSKVLTVAWSPDNQRLATGSIDTSVIIWDMKKPGEHPVIIKGAHPMSSVNVVRW 578
Query: 492 SPMENNLLSGQE 527
+ +GQ+
Sbjct: 579 LDETTVVSAGQD 590
Score = 31.1 bits (67), Expect = 0.80
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 321 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
V H + + W+P+ +RI T S D++ +W
Sbjct: 234 VAHTGSIFALAWSPDQSRIATASADKSVKIW 264
>Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical
protein T04A8.7a protein.
Length = 681
Score = 34.3 bits (75), Expect = 0.086
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 294 NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC----SVDRNAYVWTQGDDGKWATTL 449
+ +KQ V+ D V G++WAP ++ + D+NA V+ + + GKW+ T+
Sbjct: 51 SSYKQFGLNVQPDNSVKGLEWAPAAEKLALIGDFNNWDQNANVYKKEEHGKWSITV 106
>AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical
protein Y54H5A.1 protein.
Length = 453
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 345 GIDWAP-NTNRIVTCSVDRNAYVWTQGDDGKWAT-TLVLLRINRAATCVKWSPMENNLLS 518
G+ W+ T + T + + Y+W + G+WA L ++ + WSP E LL+
Sbjct: 233 GLAWSSLKTGDLATGDIIKKIYLWQMKEGGQWAVGANPLTGHKKSVEDLAWSPTETGLLA 292
Query: 519 GQELD 533
D
Sbjct: 293 SCSAD 297
>AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform a protein.
Length = 313
Score = 32.7 bits (71), Expect = 0.26
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Frame = +3
Query: 279 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNT------NRIVTCSVDRNAYVWTQGD-DGKW 437
Y N+W + H+ V + WAP + R+V+ D+N +W D +W
Sbjct: 135 YDNSSNEWISSKIQKCHEQGVNSVCWAPGSADPAAKKRLVSAGNDKNVKIWAFDDATNEW 194
Query: 438 ATTLVLLRINRAATCVKWSPMENN 509
L W P+ NN
Sbjct: 195 ILEKTLAGHTDFVREAAWCPVTNN 218
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 497 HGEQFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNN 640
+G A S I I ++ +N W+S I+K V S+ W P +
Sbjct: 117 YGLMLASASADGDIGILRYDNSSNEWISSKIQKCHEQGVNSVCWAPGS 164
>Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical
protein C36B1.5 protein.
Length = 496
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 300 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 425
W+ L HD R++ +D +P+ + + + DR +W Q D
Sbjct: 454 WQPLRQLQGHDTRILCVDISPDGQWMCSSAFDRTFKLWAQSD 495
>U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated
protein 78, isoform a protein.
Length = 611
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 309 TNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
TN+ H +V + W+P+ R+ T S+D + VW
Sbjct: 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 563
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 321 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
V H V G+ W+P+ +I + S D+ +W
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein.
Length = 611
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 309 TNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
TN+ H +V + W+P+ R+ T S+D + VW
Sbjct: 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 563
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 321 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
V H V G+ W+P+ +I + S D+ +W
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical
protein R06A4.9 protein.
Length = 809
Score = 31.9 bits (69), Expect = 0.46
Identities = 23/88 (26%), Positives = 36/88 (40%)
Frame = +3
Query: 330 DLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENN 509
D + G+ +AP + T S D A VW D ++ VL C+ W P +
Sbjct: 217 DEAIRGLAFAPTDVKFATASDDGTARVW---DFARYTEERVLRGHGAEVRCIDWHPTKGL 273
Query: 510 LLSGQELD*YQFAILRRKIIGGCLSILR 593
+ +G D Q + G CL+ L+
Sbjct: 274 IATGSR-DTQQPVKIWDPKSGSCLATLQ 300
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 611 VTSIDWHPNNILLVAGSADFQ 673
V IDWHP L+ GS D Q
Sbjct: 262 VRCIDWHPTKGLIATGSRDTQ 282
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 31.9 bits (69), Expect = 0.46
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 300 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 416
W + +L +H V G+ + N +VTCS+D++ V++
Sbjct: 453 WSEVVSLSDHSGPVTGVRFGENARSLVTCSLDKSLRVFS 491
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 551 FEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFQVRVFSA 691
+EKE K K I + V HP+NI ++ SAD +RV+SA
Sbjct: 238 YEKEQVMQTFKGHNKKINAVVL----HPDNITAISASADSHIRVWSA 280
>Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical
protein R01H10.3d protein.
Length = 495
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Frame = +3
Query: 327 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG----KWATTLVLLRINRAATCVKW 491
H + + W+P N N I +CS D VW D G + L + + W
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLSEPAVELTGHQKRVNTIAW 137
Query: 492 SPMENNLL 515
P+ NN+L
Sbjct: 138 HPVANNVL 145
>Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical
protein R01H10.3c protein.
Length = 607
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Frame = +3
Query: 327 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG----KWATTLVLLRINRAATCVKW 491
H + + W+P N N I +CS D VW D G + L + + W
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLSEPAVELTGHQKRVNTIAW 137
Query: 492 SPMENNLL 515
P+ NN+L
Sbjct: 138 HPVANNVL 145
>Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical
protein R01H10.3b protein.
Length = 538
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Frame = +3
Query: 327 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG----KWATTLVLLRINRAATCVKW 491
H + + W+P N N I +CS D VW D G + L + + W
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLSEPAVELTGHQKRVNTIAW 137
Query: 492 SPMENNLL 515
P+ NN+L
Sbjct: 138 HPVANNVL 145
>Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical
protein R01H10.3a protein.
Length = 605
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Frame = +3
Query: 327 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG----KWATTLVLLRINRAATCVKW 491
H + + W+P N N I +CS D VW D G + L + + W
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLSEPAVELTGHQKRVNTIAW 137
Query: 492 SPMENNLL 515
P+ NN+L
Sbjct: 138 HPVANNVL 145
>U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated
protein 78, isoform b protein.
Length = 517
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 321 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
V H V G+ W+P+ +I + S D+ +W
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical
protein F13H8.2 protein.
Length = 929
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 261 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
NN +Y N K +L H L V +D AP++ VT SVD++ VW
Sbjct: 565 NNTCSVYFV--NTLKFFVSLYGHSLPVTCVDIAPSSKLCVTGSVDKSVKVW 613
>AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical
protein Y110A7A.8 protein.
Length = 504
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -3
Query: 425 ISLSPDVSITV-NRTRNNTVGVGS-PINPHHSKVVFHKVVCLLP 300
++ P ++ V +T+ N +G + NPHH + FH++V +P
Sbjct: 250 LATMPSCNVQVLGKTKKNLIGFSTVSTNPHHGFIYFHQLVQKMP 293
>AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical
protein Y43F4B.4 protein.
Length = 363
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 282 KKEGNDWKQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQ 419
K +GN W+++ + H V + WA P +IV TCS DR +W +
Sbjct: 47 KPDGN-WRRSAHWKCHGGAVWRVIWAHPEFGQIVATCSYDRTIVIWEE 93
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 348 IDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 437
+ + P+ R+ TC+ D +W + DG W
Sbjct: 23 VSFDPHGRRMATCASDMTMAIWDRKPDGNW 52
>U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical
protein K10D2.1b protein.
Length = 669
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 611 VTSIDWHPNNILLVAGSADFQVRVFSA 691
V +++W PN L +GS D+++ +++A
Sbjct: 136 VLTVEWSPNGKYLASGSIDYRIIIYNA 162
>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
protein K10D2.1a protein.
Length = 1223
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 611 VTSIDWHPNNILLVAGSADFQVRVFSA 691
V +++W PN L +GS D+++ +++A
Sbjct: 424 VLTVEWSPNGKYLASGSIDYRIIIYNA 450
>U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20
protein family) homologprotein 1 protein.
Length = 507
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +3
Query: 222 MEQG*KSNCILPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRN 401
M G KS I+ N++V I + + W N H V ++W+ + N V+ S DR
Sbjct: 284 MTCGYKSGDIV--NHDVRISQHVVSSWGGDNG---HCRDVTALEWSADENMCVSGSSDRT 338
Query: 402 AYVW 413
A +W
Sbjct: 339 AKIW 342
>Z81523-5|CAB04240.2| 298|Caenorhabditis elegans Hypothetical
protein F32H2.4 protein.
Length = 298
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +2
Query: 497 HGEQFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFQV 676
+G+ A GS I I Y + KH + S+ WHPN++LL ++D
Sbjct: 229 NGQLLASGSEDHSIDIAYVPDGSRCHEIKHTGETY-----SVAWHPNSLLLAYTASDSMD 283
Query: 677 RVFSAYIK 700
+A++K
Sbjct: 284 NREAAHVK 291
>Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical
protein ZK1307.6 protein.
Length = 702
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = +3
Query: 318 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 497
L H V G+ W+P+ + + D VW + T + N A + WSP
Sbjct: 518 LTNHRQEVCGLKWSPDKQLLASGGNDNQLLVWNLRRNEPIQT---YTQHNAAVKALAWSP 574
Query: 498 MENNLL 515
+ LL
Sbjct: 575 HHHGLL 580
>AF067942-4|AAG45573.2| 324|Caenorhabditis elegans Hypothetical
protein ZK6.6 protein.
Length = 324
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 567 IGGCLSILRSPFVRL*HLLIGIPI 638
+G C SPF+ L H +IGIP+
Sbjct: 255 LGSCFIFFLSPFLNLYHYVIGIPL 278
>AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform b protein.
Length = 211
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 497 HGEQFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNN 640
+G A S I I ++ +N W+S I+K V S+ W P +
Sbjct: 117 YGLMLASASADGDIGILRYDNSSNEWISSKIQKCHEQGVNSVCWAPGS 164
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Frame = +3
Query: 279 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNT------NRIVTCSVDRNAYVWTQGDDG 431
Y N+W + H+ V + WAP + R+V+ D+N +W G
Sbjct: 135 YDNSSNEWISSKIQKCHEQGVNSVCWAPGSADPAAKKRLVSAGNDKNVKIWALSQFG 191
>Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical protein
F36D3.5 protein.
Length = 1152
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 273 HIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 428
HI+ E D K TN+ +E + + APNT ++ D N + T D
Sbjct: 931 HIWMDERTDNKITNDFMEKFQAITSDEAAPNTTHVIV-KTDENGVLETDDLD 981
>Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical
protein CC4.3 protein.
Length = 510
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 249 ILPNNNEVHIYKKEG-NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 425
IL N+ H+ + G K + H + + ++ N I++CS D + VW G
Sbjct: 322 ILSGGND-HVVRVHGMKSGKCLKEMRGHSSYITDVRYSDEGNHIISCSTDGSIRVW-HGK 379
Query: 426 DGKWATT 446
G+ +T
Sbjct: 380 SGECLST 386
>AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein.
Length = 510
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 249 ILPNNNEVHIYKKEG-NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 425
IL N+ H+ + G K + H + + ++ N I++CS D + VW G
Sbjct: 322 ILSGGND-HVVRVHGMKSGKCLKEMRGHSSYITDVRYSDEGNHIISCSTDGSIRVW-HGK 379
Query: 426 DGKWATT 446
G+ +T
Sbjct: 380 SGECLST 386
>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
protein F26D2.10 protein.
Length = 1213
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 273 HIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 428
HI+ E D K TN+ +E + + APNT ++ D N + T D
Sbjct: 992 HIWMDEITDNKITNDFMEKFQAITSDEAAPNTTHVIV-KTDENGVLDTDNLD 1042
>Z79756-4|CAB02116.2| 478|Caenorhabditis elegans Hypothetical
protein F53C11.7 protein.
Length = 478
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 318 LVEHDLRVMGIDWAPNT-NRIVTCSVDRNAYVW 413
L H+ + G+ WAP++ + I T D A +W
Sbjct: 398 LRNHEATINGLSWAPHSGSHICTAGDDYQALIW 430
>Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 575 VSKHIKKPIRSTVTSIDWHPNNILLVAGSADFQVRVF 685
+S H KK S VTS+ +HP+ L+ + AD +V+
Sbjct: 638 ISAHRKKN-DSAVTSVAFHPSRSLIGSAGADSLAKVY 673
>Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 575 VSKHIKKPIRSTVTSIDWHPNNILLVAGSADFQVRVF 685
+S H KK S VTS+ +HP+ L+ + AD +V+
Sbjct: 638 ISAHRKKN-DSAVTSVAFHPSRSLIGSAGADSLAKVY 673
>U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical
protein T27F7.2b protein.
Length = 722
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 666 SAEPATSKMLLGCQSIDVTVERMGFLICLDTHQLFSFSK*QI-DINLAPD 520
S +P TS G QS+++++ +G IC + L S S ++ DI+ PD
Sbjct: 169 SFQPTTSG---GMQSVELSISVLGVKICCEKTVLMSHSLRRVTDISARPD 215
>U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical
protein T27F7.2a protein.
Length = 732
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 666 SAEPATSKMLLGCQSIDVTVERMGFLICLDTHQLFSFSK*QI-DINLAPD 520
S +P TS G QS+++++ +G IC + L S S ++ DI+ PD
Sbjct: 179 SFQPTTSG---GMQSVELSISVLGVKICCEKTVLMSHSLRRVTDISARPD 225
>AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical
protein W07E6.2 protein.
Length = 473
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Frame = +2
Query: 506 QFAVGSGARLISICYFEKENNWWVSKHIK--KPIRS---TVTSIDWHPNNILLVAGSADF 670
Q R I+ F+K W + K +R V + W ++ LLV+GSAD
Sbjct: 365 QVVFSPDTRYIASASFDKSVKLWCGRTGKYLASLRGHVGPVYQVAWSADSRLLVSGSADS 424
Query: 671 QVRVFSAYIKDI 706
++VF K +
Sbjct: 425 TLKVFELKTKSL 436
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,823,816
Number of Sequences: 27780
Number of extensions: 381007
Number of successful extensions: 1083
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -