Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00107
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                27   0.17 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 408 VWTQGDDGKWATTLVLLRINRAATCVKWSPMENNLLSG 521
           +W   +DGK       L+ +     V++SPME N L G
Sbjct: 9   LWCPDNDGKMVDLTQCLQESSTGQSVEFSPMELNALVG 46


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 310 VCFQSFPSFLYM*TSLLFGRMQFDFYP 230
           V F +FP++ +  T  LFG +   ++P
Sbjct: 190 VTFNAFPTYTHEITYSLFGMIMMYWFP 216


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 649 EQNVIGMPINRCHSRTNGLLNMLR 578
           E   IG  +++CH+R     NM R
Sbjct: 700 EPQPIGKALSKCHNRNVTTCNMFR 723


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,945
Number of Sequences: 438
Number of extensions: 4732
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)