Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00107
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 105 3e-23
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 105 3e-23
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 105 3e-23
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 42 4e-04
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 41 7e-04
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 40 0.001
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 37 0.011
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 37 0.015
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 36 0.035
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 35 0.060
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 33 0.14
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 33 0.18
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 33 0.18
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 33 0.24
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 33 0.24
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 32 0.32
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 32 0.32
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 32 0.32
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 32 0.32
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 32 0.32
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 31 0.56
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 31 0.56
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 31 0.56
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 31 0.74
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 31 0.74
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 31 0.74
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 31 0.74
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 31 0.74
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 30 1.7
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 30 1.7
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 30 1.7
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 29 2.3
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 29 2.3
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 29 2.3
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 29 2.3
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 29 2.3
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 29 2.3
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 29 2.3
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 29 2.3
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 29 3.0
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 29 3.0
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea... 29 3.0
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 29 4.0
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 29 4.0
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 29 4.0
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 28 5.2
At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR... 28 5.2
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 28 6.9
At1g73150.1 68414.m08460 DNA-binding bromodomain-containing prot... 28 6.9
At5g23910.1 68418.m02808 kinesin motor protein-related 27 9.2
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 27 9.2
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea... 27 9.2
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 27 9.2
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 27 9.2
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 27 9.2
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 27 9.2
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 27 9.2
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 105 bits (252), Expect = 3e-23
Identities = 48/92 (52%), Positives = 63/92 (68%), Gaps = 1/92 (1%)
Frame = +3
Query: 249 ILPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 425
+ PNN EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+ +
Sbjct: 27 LCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL-E 85
Query: 426 DGKWATTLVLLRINRAATCVKWSPMENNLLSG 521
+W TLV+LR+NRAA CV+WSP EN G
Sbjct: 86 GAEWVPTLVILRLNRAALCVQWSPKENKFAVG 117
Score = 95.9 bits (228), Expect = 2e-20
Identities = 40/67 (59%), Positives = 52/67 (77%)
Frame = +2
Query: 506 QFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFQVRVF 685
+FAVGSGA+ + ICY+E+ENNWWVSK I+K S+VTS+ WHPNN+LL S D + RVF
Sbjct: 113 KFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVF 172
Query: 686 SAYIKDI 706
S +IK +
Sbjct: 173 STFIKGV 179
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 279 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 416
Y++E N W H+ V + W PN + T S D V++
Sbjct: 128 YEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFS 173
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 105 bits (252), Expect = 3e-23
Identities = 48/92 (52%), Positives = 63/92 (68%), Gaps = 1/92 (1%)
Frame = +3
Query: 249 ILPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 425
+ PNN EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+ +
Sbjct: 27 LCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL-E 85
Query: 426 DGKWATTLVLLRINRAATCVKWSPMENNLLSG 521
+W TLV+LR+NRAA CV+WSP EN G
Sbjct: 86 GAEWVPTLVILRLNRAALCVQWSPKENKFAVG 117
Score = 95.9 bits (228), Expect = 2e-20
Identities = 40/67 (59%), Positives = 52/67 (77%)
Frame = +2
Query: 506 QFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFQVRVF 685
+FAVGSGA+ + ICY+E+ENNWWVSK I+K S+VTS+ WHPNN+LL S D + RVF
Sbjct: 113 KFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVF 172
Query: 686 SAYIKDI 706
S +IK +
Sbjct: 173 STFIKGV 179
Score = 30.7 bits (66), Expect = 0.98
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 15/93 (16%)
Frame = +3
Query: 279 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT---QGDDGKWATTL 449
Y++E N W H+ V + W PN + T S D V++ +G D K+A L
Sbjct: 128 YEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVDTKYAHYL 187
Query: 450 ---------VLLRINRA---ATCVKWSPMENNL 512
+L+++ + A VKWSP N L
Sbjct: 188 NGAFFLLKQQILQLDLSYSWAFGVKWSPSGNTL 220
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 105 bits (252), Expect = 3e-23
Identities = 48/92 (52%), Positives = 63/92 (68%), Gaps = 1/92 (1%)
Frame = +3
Query: 249 ILPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 425
+ PNN EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+ +
Sbjct: 27 LCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL-E 85
Query: 426 DGKWATTLVLLRINRAATCVKWSPMENNLLSG 521
+W TLV+LR+NRAA CV+WSP EN G
Sbjct: 86 GAEWVPTLVILRLNRAALCVQWSPKENKFAVG 117
Score = 95.9 bits (228), Expect = 2e-20
Identities = 40/67 (59%), Positives = 52/67 (77%)
Frame = +2
Query: 506 QFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFQVRVF 685
+FAVGSGA+ + ICY+E+ENNWWVSK I+K S+VTS+ WHPNN+LL S D + RVF
Sbjct: 113 KFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVF 172
Query: 686 SAYIKDI 706
S +IK +
Sbjct: 173 STFIKGV 179
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 279 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 416
Y++E N W H+ V + W PN + T S D V++
Sbjct: 128 YEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFS 173
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/81 (23%), Positives = 40/81 (49%)
Frame = +3
Query: 276 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 455
I+K G++++ + L H+ V + W + + + TCS D++ ++W + ++ VL
Sbjct: 100 IWKNYGSEFECISTLEGHENEVKSVSWNASGSCLATCSRDKSVWIWEVLEGNEYDCAAVL 159
Query: 456 LRINRAATCVKWSPMENNLLS 518
+ V+W P + L S
Sbjct: 160 TGHTQDVKMVQWHPTMDVLFS 180
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 288 EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYV-WTQGDDGKWATTLVLLRI 464
EGN++ L H V + W P + + +CS D V W++ DDG++ L
Sbjct: 149 EGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCSYDNTIKVWWSEDDDGEYQCVQTLGES 208
Query: 465 NRAATCVKWS 494
N + WS
Sbjct: 209 NNGHSSTVWS 218
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 41.1 bits (92), Expect = 7e-04
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 285 KEGND--WKQTNNLVEHDLRVMGIDWAPNTNRI-VTCSV-DRNAYVWTQGDDGKWATTLV 452
KEGN W Q + +H + V I WAP+ + + C D N V++ DG W TT +
Sbjct: 86 KEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSLACGASDGNISVFSARADGGWDTTKI 145
Query: 453 LLRINRAATCVKWSP 497
T V W+P
Sbjct: 146 DQAHPVGVTSVSWAP 160
Score = 33.5 bits (73), Expect = 0.14
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = +3
Query: 261 NNEVHIYKKEGNDWKQT--NNLVEHDLRVMGIDWAPNT----NRIVTCSVDRNAYVWTQG 422
++ V ++K WK L +H V + WAPN + I + S D +WT G
Sbjct: 185 DSTVKVWKFSNGSWKMDCFPALNKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVIIWTIG 244
Query: 423 DDGKWATTLVLLRINRAATCVKWSPMENNLLS 518
+G+ VL V WS + NLL+
Sbjct: 245 KEGEQWEGTVLKDFKTPVWRVSWS-LTGNLLA 275
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 285 KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 455
KEG W+ T L + V + W+ N + + N VW + DG+W V+
Sbjct: 245 KEGEQWEGTV-LKDFKTPVWRVSWSLTGNLLAVSDGNNNVTVWKESVDGEWEQVTVV 300
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 542 ICYFEKENNWWVSKHIKKPIRSTVTSIDWHPN--NILLVAGSADFQVRVFSA 691
I + E N W H+ + +V SI W P+ + L G++D + VFSA
Sbjct: 83 ILWKEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSLACGASDGNISVFSA 134
Score = 31.1 bits (67), Expect = 0.74
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +3
Query: 318 LVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 491
L H V + WA P ++ +CS D +W +G+ +W V + + W
Sbjct: 52 LTGHRGPVWQVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIAW 111
Query: 492 SPMENNL 512
+P E L
Sbjct: 112 APHELGL 118
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 285 KEGND--WKQTNNLVEHDLRVMGIDWAPNTNRI-VTC-SVDRNAYVWTQGDDGKWATTLV 452
KEGN W Q + +H V I WAP+ + + C S D N V+T DG W T+ +
Sbjct: 86 KEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSLACGSSDGNISVFTARADGGWDTSRI 145
Query: 453 LLRINRAATCVKWSP 497
T V W+P
Sbjct: 146 DQAHPVGVTSVSWAP 160
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 542 ICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNI--LLVAGSADFQVRVFSA 691
I + E N W H+ +S+V SI W P++I L GS+D + VF+A
Sbjct: 83 ILWKEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSLACGSSDGNISVFTA 134
Score = 35.1 bits (77), Expect = 0.046
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = +3
Query: 261 NNEVHIYKKEGNDWKQT--NNLVEHDLRVMGIDWAPNT----NRIVTCSVDRNAYVWTQG 422
+N V ++K WK L +H V + WAPN + I + S D +WT G
Sbjct: 185 DNTVKVWKLANGSWKMDCFPALQKHTDWVRDVAWAPNLGLPKSTIASGSQDGKVIIWTVG 244
Query: 423 DDGKWATTLVLLRINRAATCVKWSPMENNLLS 518
+G+ VL V WS + NLL+
Sbjct: 245 KEGEQWEGKVLKDFMTPVWRVSWS-LTGNLLA 275
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +3
Query: 303 KQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQGDDGKWATTLVLLRINRAA 476
+Q L H V + WA P I+ +CS D +W +G+ +W V +
Sbjct: 47 QQLATLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSV 106
Query: 477 TCVKWSPMENNL 512
+ W+P + L
Sbjct: 107 NSIAWAPHDIGL 118
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 285 KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 437
KEG W + L + V + W+ N + + N VW + DG+W
Sbjct: 245 KEGEQW-EGKVLKDFMTPVWRVSWSLTGNLLAVSDGNNNVTVWKEAVDGEW 294
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 37.1 bits (82), Expect = 0.011
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 327 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 431
H + + W+P++ R++T S D++A VW +DG
Sbjct: 95 HKGSIYAVSWSPDSKRVLTVSADKSAKVWEVAEDG 129
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 261 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
N E ++ +E K NN++ H R+ + W+PN + T S+D V+
Sbjct: 377 NREAVVWDRETKQVK-LNNMLFHTARINSLAWSPNNKMVATGSIDTCVIVY 426
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +3
Query: 327 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMEN 506
H + W P ++ T S D+ +W+ +D + LVL + T V W+ ++
Sbjct: 695 HKRIIWACSWNPFGHQFATSSRDKTVKIWSVENDARIKQILVLPPFGSSVTAVAWTGLDR 754
Query: 507 NLLSG 521
N SG
Sbjct: 755 NEKSG 759
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 557 KENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFQVRVFSAYIKD 703
KE+ W + + + VT + W L++ S D RVFSA+ D
Sbjct: 400 KESENWQMQKVPSGHFAAVTDVTWARTGEYLLSVSQDQTTRVFSAWKND 448
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 35.5 bits (78), Expect = 0.035
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 330 DLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
DL+V +DW P NRIV+ S D VW
Sbjct: 3 DLQVYSLDWTPERNRIVSASQDGRLIVW 30
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 34.7 bits (76), Expect = 0.060
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +3
Query: 276 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW--TQGDDGKWATTL 449
+++ D + + L H+ V + W + + + TC D++ ++W +D ++ T
Sbjct: 74 VWENFATDSESVSVLRGHESEVKSVSWNASGSLLATCGRDKSVWIWEIQPEEDDEFDTIA 133
Query: 450 VLLRINRAATCVKWSPMENNLLS 518
VL + V W P + L S
Sbjct: 134 VLTGHSEDVKMVLWHPTMDVLFS 156
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 276 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATTLV 452
I +E +++ L H V + W P + + +CS D +W ++ +DG +
Sbjct: 121 IQPEEDDEFDTIAVLTGHSEDVKMVLWHPTMDVLFSCSYDNTIKIWCSEDEDGDYNCVQT 180
Query: 453 LLRINRAATCVKWS 494
L +N + WS
Sbjct: 181 LSELNNGHSSTVWS 194
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 303 KQTNNLVEHDLRVMGIDWAPNTNRIV-TCSVDRNAYVWTQ 419
++ L H RV + W P + ++ +CS D+ +W Q
Sbjct: 11 EEVQKLEGHTDRVWNVAWNPAADGVIASCSADKTVRIWEQ 50
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 33.5 bits (73), Expect = 0.14
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +3
Query: 327 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 455
H + + W+P+ +++T S D++A +W D+G + L
Sbjct: 231 HKGSIYAVSWSPDGKQVLTVSADKSAKIWDISDNGSGSLNTTL 273
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 327 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
H +V +DW P NRIV+ S D VW
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRLIVW 92
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 327 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
H +V +DW P NRIV+ S D VW
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRLIVW 92
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 32.7 bits (71), Expect = 0.24
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 327 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---WSP 497
H V G+ W+ + ++ + D ++W + +TT L R+ + VK W P
Sbjct: 265 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 324
Query: 498 MENNLLS 518
+ NLL+
Sbjct: 325 FQANLLA 331
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 32.7 bits (71), Expect = 0.24
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 327 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---WSP 497
H V G+ W+ + ++ + D ++W + +TT L R+ + VK W P
Sbjct: 255 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 314
Query: 498 MENNLLS 518
+ NLL+
Sbjct: 315 FQANLLA 321
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 276 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLV 452
++ E N WK +L H V+ + W+P+ +++ SVD + +W D K + +
Sbjct: 34 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW---DVNKGSVHQI 90
Query: 453 LLRINRAATCVKWSPMENNLLS 518
L V W P+ + S
Sbjct: 91 LDAHCHYVQGVAWDPLAKYVAS 112
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 276 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLV 452
++ E N WK +L H V+ + W+P+ +++ SVD + +W D K + +
Sbjct: 93 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW---DVNKGSVHQI 149
Query: 453 LLRINRAATCVKWSPMENNLLS 518
L V W P+ + S
Sbjct: 150 LDAHCHYVQGVAWDPLAKYVAS 171
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 276 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLV 452
++ E N WK +L H V+ + W+P+ +++ SVD + +W D K + +
Sbjct: 93 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW---DVNKGSVHQI 149
Query: 453 LLRINRAATCVKWSPMENNLLS 518
L V W P+ + S
Sbjct: 150 LDAHCHYVQGVAWDPLAKYVAS 171
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 32.3 bits (70), Expect = 0.32
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +3
Query: 318 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 497
LV H V + ++ + + T S D A +W DD K L + V WSP
Sbjct: 220 LVAHKNEVWFVQFSNSGKYLATASSDCTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSP 279
Query: 498 MENNLLS 518
+ LL+
Sbjct: 280 DDTKLLT 286
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 32.3 bits (70), Expect = 0.32
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +3
Query: 297 DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
+WK L H V+ ++W+P+ + + + S+D ++W
Sbjct: 107 NWKAVMTLRGHTADVVDLNWSPDDSMLASGSLDNTVHIW 145
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Frame = +3
Query: 261 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD----- 425
+N VHI+ T L H V G+ W P + I + S D+ +W D
Sbjct: 139 DNTVHIWNMRTG--MCTTVLRGHLSLVKGVTWDPIGSFIASQSDDKTVIIWRTSDWGMAH 196
Query: 426 --DGKWATTL 449
DG WA +L
Sbjct: 197 RTDGHWAKSL 206
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 31.5 bits (68), Expect = 0.56
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 303 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 482
K + + H ++ I W+ N NR+++ SVD + +W G + L + N T
Sbjct: 347 KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQIGCE----DCLGIFSHNNYVTS 401
Query: 483 VKWSPM-ENNLLSG 521
V+++P+ +++ +SG
Sbjct: 402 VQFNPVDDDHFISG 415
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 31.5 bits (68), Expect = 0.56
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 303 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 482
K + + H ++ I W+ N NR+++ SVD + +W G + L + N T
Sbjct: 347 KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQIGCE----DCLGIFSHNNYVTS 401
Query: 483 VKWSPM-ENNLLSG 521
V+++P+ +++ +SG
Sbjct: 402 VQFNPVDDDHFISG 415
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 31.5 bits (68), Expect = 0.56
Identities = 19/77 (24%), Positives = 37/77 (48%)
Frame = +3
Query: 303 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 482
K +L H ++ + W+ + +++ S+D+ +W D + T L L N TC
Sbjct: 497 KPVCSLKGHLDAILDLSWS-KSQLLLSSSMDKTVRLW----DIETKTCLKLFAHNDYVTC 551
Query: 483 VKWSPMENNLLSGQELD 533
+++SP++ N LD
Sbjct: 552 IQFSPVDENYFLSGSLD 568
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 31.1 bits (67), Expect = 0.74
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = +3
Query: 312 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 491
+ LV H V G+ W+ + + + D VW ++ L L A + W
Sbjct: 292 SKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVW---NNHSQQPILKLTEHTAAVKAITW 348
Query: 492 SPMENNLLS 518
SP +++LL+
Sbjct: 349 SPHQSSLLA 357
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 611 VTSIDWHPNNILLVAGSADFQVRVF 685
V S+DWHP LLV+G D V+++
Sbjct: 271 VKSVDWHPTKSLLVSGGKDQLVKLW 295
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 31.1 bits (67), Expect = 0.74
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 306 QTNNLVE-HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 482
QT ++E H V + ++ N + + S D+ A +W DG + L+ ++
Sbjct: 265 QTAQILESHTDEVWFLQFSHNGKYLASSSKDQTAIIWEISADGHISLKHTLVGHHKPVIA 324
Query: 483 VKWSPMENNLLS 518
+ WSP + +L+
Sbjct: 325 ILWSPDDRQVLT 336
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 31.1 bits (67), Expect = 0.74
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = +3
Query: 303 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 482
K L EH + I ++P+ R+ T S D+ VW D K + + + T
Sbjct: 684 KPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVWDA--DNKGYSLRTFMGHSSMVTS 741
Query: 483 VKWSPMENNLLSGQELD 533
+ + P++++L+ + D
Sbjct: 742 LDFHPIKDDLICSCDND 758
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/89 (22%), Positives = 39/89 (43%)
Frame = +2
Query: 422 R*WEMGNYSCSSAYQPSSDLREMVSHGEQFAVGSGARLISICYFEKENNWWVSKHIKKPI 601
R W + N SC+ Y+ S ++ S A L+++ E + +H +
Sbjct: 762 RYWSINNGSCTRVYKGGSTQIRFQPRVGKYLAASSANLVNVLDVETQ----AIRHSLQGH 817
Query: 602 RSTVTSIDWHPNNILLVAGSADFQVRVFS 688
+ + S+ W P+ L + S D V+V++
Sbjct: 818 ANPINSVCWDPSGDFLASVSED-MVKVWT 845
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 31.1 bits (67), Expect = 0.74
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 291 GNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT-QGDD 428
G D+ +L H+ +V +D +++ I T S DR +WT G+D
Sbjct: 495 GRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTSSGND 541
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 545 CYFEKENNWWVSKHIKKPIR---STVTSIDWHPNNILLVAGSADFQVRVF 685
C ++ W I+ P+R ++ +DWHPN + GS+D VR++
Sbjct: 478 CSHDRTARIWSMDRIQ-PLRIMAGHLSDVDWHPNCNYIATGSSDKTVRLW 526
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 348 IDWAPNTNRIVTCSVDRNAYVW 413
+DW PN N I T S D+ +W
Sbjct: 505 VDWHPNCNYIATGSSDKTVRLW 526
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 587 IKKPIRSTVTSIDWHPN-NILLVAGSADFQVRVF 685
++K + + +DW+P+ N L++ GSAD VRVF
Sbjct: 321 VEKAHDADLHCVDWNPHDNNLILTGSADNTVRVF 354
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +3
Query: 327 HDLRVMGIDWAPNTNR-IVTCSVDRNAYVWTQGD---DGKWATTLVLLRINRAATCVKWS 494
HD + +DW P+ N I+T S D V+ + + +G + A CV+WS
Sbjct: 325 HDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGSPVYKFEGHRAAVLCVQWS 384
Query: 495 PMENNLLSGQELD 533
P ++++ D
Sbjct: 385 PDKSSVFGSSAED 397
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 312 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWAT 443
+ L H +V I + +T+ ++T S D+ +W +DG + +
Sbjct: 258 STLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGNYTS 301
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 584 HIKKPIRSTVTSIDWHPNNILLVAGSADFQVR 679
H K + S+D+HP+ LL GSAD V+
Sbjct: 272 HEFKSHEGKIQSLDFHPHEFLLATGSADKTVK 303
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +3
Query: 312 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWA 440
+ L H +V + + +++ ++T S D+ +W DG +A
Sbjct: 258 STLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYA 300
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +3
Query: 312 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWA 440
+ L H +V + + +++ ++T S D+ +W DG +A
Sbjct: 258 STLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYA 300
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 324 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 449
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 548 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 589
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 324 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 449
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 324 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 449
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 324 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 449
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 324 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 449
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 602 RSTVTSIDWHPNNILLVAGSADFQVRVF 685
R +V + +HP+ LL GSAD ++R++
Sbjct: 17 RHSVMDVSFHPSKSLLFTGSADGELRIW 44
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +3
Query: 276 IYKKEGN--DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
+Y+K+G+ + + L H V + ++PN+ +I+T S D + VW
Sbjct: 269 VYQKDGSVKEVSRVMQLKGHKSAVTWLCFSPNSEQIITASKDGSIRVW 316
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
sapiens]
Length = 482
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +3
Query: 318 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 497
L H V D++ N I + S+D+ VW + + V+ I+ C+++ P
Sbjct: 212 LTGHSKDVTDFDFSSNNQYIASSSLDKTIRVW---ELSRGVCIRVIYGIS-PQYCIRFHP 267
Query: 498 MENNLLS 518
+ NN LS
Sbjct: 268 VNNNFLS 274
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 611 VTSIDWHPNNILLVAGSADFQVR 679
+ S+D+HP+ LL GSAD V+
Sbjct: 188 IQSLDFHPHEFLLATGSADRTVK 210
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 611 VTSIDWHPNNILLVAGSADFQVR 679
+ S+D+HP+ LL GSAD V+
Sbjct: 188 IQSLDFHPHEFLLATGSADRTVK 210
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/69 (23%), Positives = 26/69 (37%)
Frame = +3
Query: 312 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 491
+ L H V G+ W+ + + + D +VW Q L A + W
Sbjct: 329 SKLAGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST---QPVLKYSEHTAAVKAIAW 385
Query: 492 SPMENNLLS 518
SP + LL+
Sbjct: 386 SPHVHGLLA 394
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Frame = +3
Query: 312 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK- 488
+ L H + G+ W+ + + + D +VW Q +T +LR A VK
Sbjct: 286 SKLKGHKSEICGLKWSSDNRELASGGNDNKLFVWNQ------HSTQPVLRFCEHAAAVKA 339
Query: 489 --WSPMENNLLS 518
WSP LL+
Sbjct: 340 IAWSPHHFGLLA 351
>At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1981
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +3
Query: 540 QFAILRRKIIGGCLSILRSPFVRL*HLLIGIPITFCSSLALLTSKYESSLPISRI 704
+F L++ I+ GC S++ PF+ L + + CSSL L S +++ + +
Sbjct: 780 KFTNLKKFILNGCSSLVELPFMGNATNLQNLDLGNCSSLVELPSSIGNAINLQNL 834
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 327 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG-KWATTLVLLRINRAATCVKWSPME 503
H +V + W N ++ + SVD+ A +W G A L L + + W P
Sbjct: 19 HKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDLELKGHTDSVDQLCWDPKH 78
Query: 504 NNLLS 518
++L++
Sbjct: 79 SDLVA 83
>At1g73150.1 68414.m08460 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 461
Score = 27.9 bits (59), Expect = 6.9
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = -3
Query: 527 LLTRQQIVLHGRPFHASRCSVDTQKNKS---SCPFPIISLSPDVSITVNRTRNNTVGVGS 357
LL R+Q + FHA S +T ++ P P +S P + NRT + +
Sbjct: 226 LLIRKQQPVRDIDFHAP-VSTNTHNVEALPLPAPTPSLSPPPPPKVVENRTLERAESMTN 284
Query: 356 PINPHHSKVVFHKVV 312
P+ P VV K+V
Sbjct: 285 PVKPAVLPVVPEKLV 299
>At5g23910.1 68418.m02808 kinesin motor protein-related
Length = 665
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 455 SAYQPSSDLREMV--SHGEQFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTV 613
S +P D E V S G QFA + + CY E E + KP+ STV
Sbjct: 32 SVQKPMGDDSETVTISFGAQFAGSKDSYRLDYCYEENETTGSILTKEIKPLISTV 86
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +2
Query: 509 FAVGSGARLISICYFEKENNWWV-SKHIKKPIRS---TVTSIDWHPNNILLVAGSADFQV 676
F+V +G R++S + W + SK + + + TV ++ HP L+ +GS D V
Sbjct: 250 FSVTNGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLDKTV 309
Query: 677 RVFS 688
R+++
Sbjct: 310 RIWT 313
>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400); AND-1
protein - Homo sapiens, EMBL:AJ006266
Length = 951
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/63 (23%), Positives = 24/63 (38%)
Frame = +3
Query: 324 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPME 503
+H + + WAPN I T +D+ +W D + + C+ W P
Sbjct: 236 DHLEAICYLTWAPNGKYIATSGLDKQVLLW----DVDKKQDIDRHKFEERICCMSWKPNG 291
Query: 504 NNL 512
N L
Sbjct: 292 NAL 294
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 327 HDLRVMGIDWAPN-TNRIVTCSVDRNAYVW 413
HD V +DW+P+ ++ T S D +W
Sbjct: 380 HDFEVTAVDWSPSEIGKVATASDDFTVRLW 409
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 315 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 413
+L H L VM ID + + IVT S D+N +W
Sbjct: 577 SLYGHKLPVMCIDISSDGELIVTGSQDKNLKIW 609
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 294 NDWKQTNNLVEHDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQG 422
N W T H VM + + P +TN + S+DR +W G
Sbjct: 130 NGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLG 173
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 294 NDWKQTNNLVEHDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQG 422
N W T H VM + + P +TN + S+DR +W G
Sbjct: 130 NGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLG 173
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 294 NDWKQTNNLVEHDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQG 422
N W T H VM + + P +TN + S+DR +W G
Sbjct: 130 NGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLG 173
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,821,960
Number of Sequences: 28952
Number of extensions: 350565
Number of successful extensions: 1112
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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