Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00106
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 30 0.38
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 29 0.50
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 2.0
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 2.0
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 27 2.7
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 27 2.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 3.5
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 26 6.1
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 25 8.1
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 25 8.1
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 29.9 bits (64), Expect = 0.38
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 501 YRHDAYAS--TTLISAVVRNTTTFKSSITERAEKCLTALKARCLTSPV 638
Y HD A + LI + +N T F + E+ CL LK + + SP+
Sbjct: 70 YYHDVTADFPSELIELLQKNHTIFPFELCEKIVLCLVLLKNKTVISPI 117
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 29.5 bits (63), Expect = 0.50
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Frame = +3
Query: 312 MKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRI 491
+K W + S A+Q S T A R P Q D+W ++ P + I
Sbjct: 124 LKENIREWSSKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSI 183
Query: 492 TE-VYRHDAYASTTLISAVV-RNTTTFKSSITERAEKCLTA 608
++ + YA T S + N T FK++ + + L A
Sbjct: 184 SQYANMPENYALNTKKSKISNENDTIFKANFQQNKYESLHA 224
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 27.5 bits (58), Expect = 2.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 359 CSAGRVCEINEHGDAMCNCIKDC 427
C+A R+C++ E C+ DC
Sbjct: 974 CTASRICKVREIASLSLTCLLDC 996
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 27.5 bits (58), Expect = 2.0
Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Frame = +3
Query: 273 ELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVT--ASRTVPTRQTP 446
E+TT + M+ + T + + + +T ++ + + ET + A+ T P +T
Sbjct: 42 EITTMTIP--MEEITTMTTPMEEITTITTPMEETTTITPMVETTTILPMAAMTTPMVETT 99
Query: 447 DAWCAQTSTKPGNRITEVYRHDAYASTTLISAVVRNTTTFKSSITERAEKCLTALKARCL 626
+T+T P T + +TT+ V T + ++T E+ T L +
Sbjct: 100 TIPTVETTTTPMVETTTIT--PMVETTTITPMVEAMITLMEETMTTPMEETTTILPMAAM 157
Query: 627 TSPV 638
T+P+
Sbjct: 158 TTPM 161
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 27.1 bits (57), Expect = 2.7
Identities = 24/106 (22%), Positives = 44/106 (41%)
Frame = +3
Query: 192 DISEAEHIEHGMSESLDEKRYMRQK*PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQD 371
++ + + +H S++ D R + L FST L+KRM + K+L + + D
Sbjct: 379 EMQQDQKEQHKKSKNKDPFRKITHPSLHLGKFSTPKLIKRMSLRSK--KSLR-NDSKSDD 435
Query: 372 VSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRITEVYRH 509
V + T ++ V T + + S RI ++RH
Sbjct: 436 VGNSTHRFSTASAASTSAVKTEKEKKMSAPRRSLDKLIRIGSLHRH 481
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -1
Query: 304 IRDLVEKVVNSGYFCLMYRFSSKLSDIPCSMCSASEMSPRP 182
+R ++EK + FC++ + +K+S S C+ P P
Sbjct: 140 LRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLP 180
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 3.5
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Frame = +3
Query: 270 PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPD 449
P T +RS T ++ ++T+ Q S + N+ TP +T+S +V TP
Sbjct: 339 PAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSSTP-ITSS-SVLNSSTP- 395
Query: 450 AWCAQTSTKPGNRITEVYRHDAYASTTLI--SAVVRNTTTFKSSITERAEKCLTALKARC 623
TS+ N T + S+T I S+++ ++T SS + +T+ A
Sbjct: 396 ----ITSSSILNTSTPITSSSVLNSSTPITSSSILNSSTPITSSTVLNSSTPITSSTALN 451
Query: 624 LTSPV 638
++P+
Sbjct: 452 TSTPI 456
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 6.1
Identities = 7/19 (36%), Positives = 15/19 (78%)
Frame = +3
Query: 498 VYRHDAYASTTLISAVVRN 554
+Y++D + S+T++ A +RN
Sbjct: 242 IYKNDTFVSSTMVRAAIRN 260
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 429 PTRQTPDAWCAQTSTKPGNRITEVYRHDAYASTTLISAVVRNT 557
P RQT A T+ KP +T + + S+ +++ +R T
Sbjct: 110 PLRQTASPQVADTNLKPSLAVTNLNSDETNTSSEPVTSPLRTT 152
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -1
Query: 439 CLVGTVLDAVTHGVSVFVDFADT-SC 365
CL+ + LD +T G+S F++ D SC
Sbjct: 265 CLITSHLDTLTKGISQFIEKRDAHSC 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,790
Number of Sequences: 5004
Number of extensions: 50665
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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