Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00106
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962...    30   2.1  
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    29   2.8  
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335...    29   3.7  
03_02_0520 + 9092020-9092079,9092253-9093047                           29   4.8  
11_06_0344 + 22540436-22540737,22541304-22543545                       28   6.4  
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11...    28   6.4  
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634...    28   8.5  
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333...    28   8.5  
06_01_0985 - 7646772-7647451,7647957-7648107                           28   8.5  
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576...    28   8.5  
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431           28   8.5  
01_01_0178 + 1514878-1515417                                           28   8.5  

>08_01_0961 -
           9622444-9622928,9623011-9623102,9623862-9624002,
           9624460-9624506,9624581-9624639,9624780-9624940,
           9625021-9625196,9625284-9625355,9625820-9625879,
           9625997-9626191
          Length = 495

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +3

Query: 513 AYASTTLISAV--VRNTTTFKSSITERA-EKCLTALKARCLTSPVACGTGFLTSCATWL 680
           +Y S  L+S V   R     K+S++    + C   L   C  S   CG  F T CA +L
Sbjct: 290 SYLSLPLMSIVKIARECGWRKTSVSSVCHDPCAICLDTECTVSAEGCGHEFCTKCALYL 348


>04_03_0582 +
           17528335-17529790,17529913-17531651,17531814-17532035,
           17532062-17533525
          Length = 1626

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 483 NRITEVYRHDAYASTTLISAVVRNTTTFKSSITERAEK-CLTALKARCLTSPVACGTG 653
           ++I  V    +  S  +I A+ RN  + + S+ E +   C++  K + LT+PVA G G
Sbjct: 380 HKIGPVEESASLPSMEMIPAI-RNLNSHQESLEESSSADCISPTKRKALTAPVAKGLG 436


>09_04_0330 +
           16731390-16731699,16731774-16732080,16732182-16733561,
           16734064-16734112
          Length = 681

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 350 KVHCSAGRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQ 484
           K   +A  VCE +  G+ + +C      + D  RM C +  E WQ
Sbjct: 602 KEEAAAAAVCEGSGGGERVVDCACGA-VDDDGERMACCDICEAWQ 645


>03_02_0520 + 9092020-9092079,9092253-9093047
          Length = 284

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 221 VLDVFSLRDVPAAELLRRWTFSSR 150
           VLD+ +++ +PA  +L+RWT  +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161


>11_06_0344 + 22540436-22540737,22541304-22543545
          Length = 847

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 561 TFKSSITERAEKCLTALKARCLTSP 635
           T +S   ERAE+C + L  RC+  P
Sbjct: 299 TLQSGFEERAEECFSQLVQRCIIRP 323


>11_01_0014 +
           108647-108816,109704-109803,109891-110018,110232-110394,
           110491-110603,111080-111118,111319-111402,111486-111534,
           111624-111715,111999-112128,112225-112301,112377-113995,
           114348-114545,114635-115173
          Length = 1166

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +3

Query: 336 KTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKP 479
           +T A    ++Q ++   T+ ++   ++S TV + + P +W   TST P
Sbjct: 390 RTTATGVASSQSLTKSKTDPQSNSFSSSSTVSSTKLPSSWNDDTSTVP 437


>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
            17466161-17466346
          Length = 1831

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = -1

Query: 406  HGVSVFVDFADTSCAAVDF------QARVFHVDFFVFILFIRDLVEKVVNSGYF 263
            HG+ V  +FAD S   V++         +  V+ F  + FIR+L E  + S  F
Sbjct: 984  HGIGVQFEFADASVHIVNYLMSKSSNGALSRVNMFAMLQFIRNLTENNLTSVNF 1037


>12_01_0423 +
           3337401-3337419,3337777-3338235,3338650-3338735,
           3338974-3339022,3339225-3339533,3339555-3339710,
           3339871-3340086,3340404-3340906,3341050-3341116,
           3341215-3341272,3341561-3341699,3341840-3341956,
           3342069-3342246,3342459-3343093
          Length = 996

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 417 SRTVPTRQTPDAWCAQTSTKPGNRITEVYRHDAY 518
           +R  P  QTPDA  A + T+P  ++  +   +AY
Sbjct: 380 TRIQPYTQTPDADSATSGTQPAAKLNSISAMEAY 413


>06_01_0985 - 7646772-7647451,7647957-7648107
          Length = 276

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 221 VLDVFSLRDVPAAELLRRWTFSSR 150
           VLDV +++ +P   +L+RWT  +R
Sbjct: 240 VLDVMNIKSLPKRYILKRWTREAR 263


>05_06_0246 +
           26656629-26656907,26657001-26657228,26657595-26657630,
           26658362-26658475,26658562-26659167
          Length = 420

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 244 SSKLSDIPCSMCSASEMSPRPSCSDVG 164
           S+  SD PC + SAS  S  P+ SD G
Sbjct: 310 SASSSDFPCDVSSASTSSATPARSDGG 336


>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
          Length = 370

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 221 VLDVFSLRDVPAAELLRRWTFSSR 150
           VLD+ ++  +PA  +L+RWT  +R
Sbjct: 196 VLDLMNIESLPAQYILKRWTREAR 219


>01_01_0178 + 1514878-1515417
          Length = 179

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 494 RSIPPRCLCLDNSDQCRGPQYHHVQIE 574
           RS+PP C C D    C G     VQ+E
Sbjct: 128 RSMPPTCSCQDKVKSCSGGCGKCVQVE 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,804,727
Number of Sequences: 37544
Number of extensions: 407550
Number of successful extensions: 1201
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)