Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00106
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37210.1 68418.m04468 DC1 domain-containing protein contains ...    28   7.1  
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr...    28   7.1  
At1g76660.1 68414.m08920 expressed protein                             27   9.3  
At1g48650.1 68414.m05445 helicase domain-containing protein cont...    27   9.3  

>At5g37210.1 68418.m04468 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 625

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
 Frame = +2

Query: 410 NCIK-DCPYETDSRRMVCTNFNETW---------QSDYRSIPPRCLCLDNSDQCRGPQYH 559
           +C+K  C Y   SR   C   +  W         + D   IPP     D   Q    QYH
Sbjct: 320 SCVKYGCSYAAHSR---CATQSNVWDGVELEGEPEEDIEEIPPFVRISDGIIQHFIHQYH 376

Query: 560 HVQIEYYGTCRE 595
           H++++   TCRE
Sbjct: 377 HLRLD-ENTCRE 387


>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
           protein (PEX10) identical to zinc-binding peroxisomal
           integral membrane protein GI:4337011 from [Arabidopsis
           thaliana]
          Length = 381

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +3

Query: 552 NTTTFKSSITERAEKCLTALKARCLTSPVACGTGFLTSC-ATWLN 683
           N +T  S+ TE   KC   L  R   +   CG  F  SC   W N
Sbjct: 312 NWSTSDSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWCN 356


>At1g76660.1 68414.m08920 expressed protein 
          Length = 431

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 411 TASRTVPTRQTPDAWCAQTSTKPGNRITEVYRHDAYA-STTLISAVVRNTTTFKSS 575
           T S    T Q+P+ + +  +  PG   + +Y    YA  T L+S  V +T T + S
Sbjct: 79  TNSALPSTTQSPNCYLSLAANSPGGPSSSMYATGPYAHETQLVSPPVFSTFTTEPS 134


>At1g48650.1 68414.m05445 helicase domain-containing protein
           contains similarity to DEIH-box RNA/DNA helicase
           [Arabidopsis thaliana] GI:5881579; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain, PF00035:
           Double-stranded RNA binding motif
          Length = 1197

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 98  MTAITRANARRPFILPFDDAFLCEAGGSR 12
           MT +   + R PF++PFD   L E   S+
Sbjct: 810 MTVVAGLSVRDPFLMPFDKKDLAETARSK 838


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,855,623
Number of Sequences: 28952
Number of extensions: 292079
Number of successful extensions: 824
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)