Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00104
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0579 - 25181389-25182289,25182556-25182584                       30   2.2  
12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730           29   3.8  
06_02_0214 + 13141213-13143741                                         29   3.8  
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826...    28   8.7  

>11_06_0579 - 25181389-25182289,25182556-25182584
          Length = 309

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = -2

Query: 363 RLRSHPGVSRCNHDSQLIHHQCISFLSCIQTSKLSNRKGSSSILVAVFEAEQIRIPGVDT 184
           R   HP  SR     +L  +  I    CI   K   + G    LV +  A   +   V T
Sbjct: 10  RKHLHPESSRIEWSGELQQYNMID--ECIHEKKAGRQLGRVMRLVGIGRACSTKPVKVST 67

Query: 183 DIKRIVAQRI 154
           D+KR++  ++
Sbjct: 68  DVKRLILDKM 77


>12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730
          Length = 1072

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 363  RLRSHPGVSRCNHDSQLIHHQCISFLSCIQTSKLSNRKGSSSILV 229
            RL +  G  + N D  + + +  S + C + +K  N + SSSILV
Sbjct: 951  RLAALEGDEKENEDMSVSNQEIGSHMDCQEVNKKGNNESSSSILV 995


>06_02_0214 + 13141213-13143741
          Length = 842

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 136 ACSSNVNPLCNDPFNIRIDTGNSYLFRLENCD 231
           A S+  N L N  +   +D+G SYL R   CD
Sbjct: 284 AASNTTNALFNMTWQFDVDSGFSYLIRFHFCD 315


>01_06_1758 -
           39681942-39682030,39682115-39682345,39682643-39682679,
           39683604-39683835,39683937-39684022,39684126-39684218,
           39684302-39684465,39684541-39684702,39684783-39684962,
           39685079-39685515,39685614-39685669
          Length = 588

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 219 EAEQIRIPGVDTDIKRIVAQRIHVRRTRPTIHW 121
           EA+++   G +  I++IVAQ   +R  R T++W
Sbjct: 311 EADRMLDMGFEPQIRKIVAQAWLIRPDRQTLYW 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,628,962
Number of Sequences: 37544
Number of extensions: 304411
Number of successful extensions: 738
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)