Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00104
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53209| Best HMM Match : Thyroglobulin_1 (HMM E-Value=9.9e-15)       29   5.1  
SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_53209| Best HMM Match : Thyroglobulin_1 (HMM E-Value=9.9e-15)
          Length = 104

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/63 (23%), Positives = 25/63 (39%)
 Frame = +3

Query: 228 RQECWSYLSYLTASKSVCKKEKKYIDGELVVSRGCTWKRQDDFEVGCPTSRNEANEVNLF 407
           R   W+ +S        CK +  Y   +  V  G  W+    + V  P+  N+ N  N+ 
Sbjct: 11  RALAWTGISVPGLFVPECKPDGTYEGMQCHVGTGLCWQYDSIYGVFSPSCENDGNYTNIQ 70

Query: 408 CQT 416
           C +
Sbjct: 71  CHS 73


>SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/80 (23%), Positives = 42/80 (52%)
 Frame = -3

Query: 242 PAFLSQFSRRNK*EFPVSIRILKGSLHSGFTLDEHAQQFTGSLSFTNSARSKTGTRNDSF 63
           P F   F  + +  +P ++ I    +H+  T+   A+  + +L  T+S+ SK GT+ +SF
Sbjct: 105 PVFHRDFIAKLRGSYPTAL-IQPKLVHTISTVMNEAELMSLNLD-TDSSASKDGTKLESF 162

Query: 62  AIMMHNKLTRLSENTRDVYR 3
              +    + +S+N +++ +
Sbjct: 163 TEDIQQSNSYISDNLKELLK 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,932,523
Number of Sequences: 59808
Number of extensions: 381533
Number of successful extensions: 823
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)