Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00104
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K) ...    28   5.5  
At4g39330.1 68417.m05568 mannitol dehydrogenase, putative nearly...    28   5.5  
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ...    28   5.5  
At3g05030.1 68416.m00546 sodium proton exchanger, putative (NHX2...    27   9.6  

>At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K)
           identical to receptor serine/threonine kinase PR5K
           gi|1235680|gb|AAC49208
          Length = 665

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -1

Query: 232 CRSFRGGTNKNSRC--RYGY*KDRCTADSR*TNTPNNSLVHCPSRIAQEAKRAQET 71
           C+     TN  + C   Y Y  D      R +N+PN  +  CP+ I+  ++ ++ET
Sbjct: 208 CQPTLYSTNFKNECPLAYSYAYDNENNTFRCSNSPNYVITFCPNDISSMSQPSKET 263


>At4g39330.1 68417.m05568 mannitol dehydrogenase, putative nearly
           identical to SP|P42734, probable mannitol dehydrogenase
          Length = 360

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 194 VSIRILKGSLHSGFTLDEHAQQFTGSLSFTNSARSKTGTRN 72
           V + ++ GS  S  + D+  + +   +SFT +A    GT+N
Sbjct: 94  VGVGVISGSCQSCESCDQDLENYCPQMSFTYNAIGSDGTKN 134


>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 679

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 366 CPTSRNEANEVNLFCQTCDYD 428
           C T ++   + +L C TCDYD
Sbjct: 43  CRTKKHHRTKYHLHCDTCDYD 63


>At3g05030.1 68416.m00546 sodium proton exchanger, putative (NHX2)
           similar to sodium proton exchanger Nhx1 GB:AAD16946
           [Arabidopsis thaliana]; Member of The Monovalent
           Cation:Proton Antiporter (CPA1) Family, PMID:11500563
          Length = 546

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -2

Query: 273 TSKLSNRKGSSSILVAVFEAEQI---RIPGVDTDIKRIVAQRIHVRRTRPTIHWF 118
           TS LS+     SI + + + EQ+    +PG   D+ R  + R  + R   T+H++
Sbjct: 455 TSMLSDDSTPKSIHIPLLDGEQLDSFELPGSHQDVPRPNSLRGFLMRPTRTVHYY 509


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,741,240
Number of Sequences: 28952
Number of extensions: 257929
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)