Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00103
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    27   0.12 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    24   1.4  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    23   3.3  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   3.3  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   3.3  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   5.8  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   5.8  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   7.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 370 PNPESWCPNPESCPKLPNPESWCPNPESCPKLPNPESRPSHRTQS 236
           P  E+  P P   P   +P S   +P +C  LPN  SR + R  S
Sbjct: 48  PEEEAASPTPGDVPTPSSPRSISEDPLNCRDLPN--SRCNSRESS 90



 Score = 25.8 bits (54), Expect = 0.36
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -3

Query: 585 AVPIPPNEVAMPSRPFSILSSSIPWSLNWKYPLRVRHCLCQNCRARSHQSYRIRSR 418
           A P PP E A    P  + + S P S++ + PL  R      C +R      ++ R
Sbjct: 43  ASPAPPEEEAASPTPGDVPTPSSPRSIS-EDPLNCRDLPNSRCNSRESSDSLVQPR 97



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -2

Query: 358 SWCPNPESCPKLPNPESWCPNPESCPKLPNPES 260
           S  PN  + P  P  E+  P P   P   +P S
Sbjct: 36  SMTPNSAASPAPPEEEAASPTPGDVPTPSSPRS 68


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 349 PNPESCPKLPNPESWCPNPESCPKLPNPESRPS 251
           P P + PK+P  E    +  S  + PNP SR S
Sbjct: 207 PKP-TVPKIPPAEFPTTSSSSALESPNPASRSS 238


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 138 IVVSSKTKAFF*SSCYSF 85
           IV SSK +A   SSC SF
Sbjct: 115 IVASSKLRASLISSCLSF 132


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 331 PKLPNPESWCPNPESCPKLPNPESRPS 251
           PK+P  E    +  S  + PNP SR S
Sbjct: 1   PKIPPAEFPTTSSSSALESPNPASRSS 27


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 331 PKLPNPESWCPNPESCPKLPNPESRPS 251
           PK+P  E    +  S  + PNP SR S
Sbjct: 1   PKIPPAEFPTTSSSSALESPNPASRSS 27


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -2

Query: 286 CPKLPNPESRPSHRTQSHDRNYRIQGCDFQSRQIRNH 176
           CP+  NPE+     T+    +   + C + S    NH
Sbjct: 13  CPECENPETELLVSTKRSTISQGCKACGYHSPLESNH 49


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 349 PNPESCPKLPNPESWCPNPESCPKLPNPESRPS 251
           P P + PK+P  E    +  S  + P+P SR S
Sbjct: 207 PKP-TVPKIPPAEFPTTSSSSALESPDPASRSS 238


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 529 IFVYTMVAKLEISFTCPALSLPKLSSAE 446
           +FVYT+V+ + I   C  ++     +AE
Sbjct: 217 VFVYTLVSVILIIMGCDVVASNSRKTAE 244


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,795
Number of Sequences: 336
Number of extensions: 3329
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)