Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00102
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 105 8e-24
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 103 2e-23
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 31 0.12
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.5
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 3.4
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 5.9
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 5.9
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 26 5.9
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 26 5.9
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 5.9
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 26 5.9
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 25 7.8
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 7.8
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 25 7.8
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 105 bits (251), Expect = 8e-24
Identities = 45/92 (48%), Positives = 71/92 (77%)
Frame = +2
Query: 227 FPQIQINRRNVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 406
F ++++ ++QG++ L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF I
Sbjct: 81 FRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVI 140
Query: 407 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 502
GFT + + +KT YAQ +Q+RAIR+KM ++I
Sbjct: 141 GFTRRRANQVKKTTYAQSSQIRAIRQKMFQVI 172
Score = 93.1 bits (221), Expect = 3e-20
Identities = 44/79 (55%), Positives = 56/79 (70%)
Frame = +3
Query: 39 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 218
+VDPF+RK+WYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77
Query: 219 ERSFRKFRLIAEMCKDVMC 275
E +FRK +L E + C
Sbjct: 78 EHAFRKVKLRVEDIQGKSC 96
Score = 67.3 bits (157), Expect = 2e-12
Identities = 28/57 (49%), Positives = 44/57 (77%)
Frame = +1
Query: 514 TNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHG 684
++ +RE+V KLIP+ I ++IE+A I+PL++V +RKVK+LK P+ + KL+ELHG
Sbjct: 177 SSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELHG 233
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 103 bits (248), Expect = 2e-23
Identities = 44/92 (47%), Positives = 70/92 (76%)
Frame = +2
Query: 227 FPQIQINRRNVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 406
F ++++ ++QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F I
Sbjct: 81 FRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVI 140
Query: 407 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 502
GFT++ +KT YAQ +Q+RAI +KM ++I
Sbjct: 141 GFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVI 172
Score = 95.9 bits (228), Expect = 5e-21
Identities = 46/79 (58%), Positives = 56/79 (70%)
Frame = +3
Query: 39 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 218
+VDPF+RKDWYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77
Query: 219 ERSFRKFRLIAEMCKDVMC 275
E SFRK +L E + C
Sbjct: 78 EHSFRKVKLRVEDIQGKSC 96
Score = 67.7 bits (158), Expect = 1e-12
Identities = 29/53 (54%), Positives = 42/53 (79%)
Frame = +1
Query: 526 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHG 684
++E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK P+ + KL+ELHG
Sbjct: 181 MKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELHG 233
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 31.5 bits (68), Expect = 0.12
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +1
Query: 433 PTQDVLRPAHSGQSNQKENV*NHYTHVTNSELREVVNKLIPDSIAKDI 576
P+ +V +P + SN++E V TH TN L E +N+ PDS+ I
Sbjct: 378 PSTEVSQPDSTNISNEQEIVQPQPTHTTNVALVEEINR--PDSVESAI 423
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2
Query: 673 PSTSRSRNGASSTLSPFGCKHRAE 602
PSTSR RN S LS KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 340 LPFFNHPPELIGCEVHAVEVAEHITS 263
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +2
Query: 317 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA-QHTQV--RAIRKK 487
++ W L+ T GYV+R GFT+ ++ + K +A + T++ RA+++
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFADKDTKLYERALQQS 854
Query: 488 MCEIITRTS 514
+ I +S
Sbjct: 855 LDTISANSS 863
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -3
Query: 549 QLVHHLPEFRVSDVRVMISHIFFLIALT*VCWA*HVLRWLKESLLVKPMQKT 394
Q ++ P R V +ISH L A+ VC+ + L++L + K + KT
Sbjct: 922 QTINRFPGHRERYVSTLISHCGDLFAINHVCFVRNSLKYLLDD-FTKVITKT 972
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 442 DVLRPAHSGQSNQKENV*NHYTHVTNSELREVVNK 546
++LRPA G + +++ N NSELR ++K
Sbjct: 79 NLLRPASEGLNEGEQSYINKRISKVNSELRSFISK 113
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 272 VLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 376
V C H MDL + LR +V ++ L+E + D++TT
Sbjct: 117 VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 400 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 492
LHW+ L+ +Q + P H+GQ S + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 442 DVLRPAHSGQSNQKENV*NHYTHVTNSELREVVNK 546
++LRPA G + +++ N NSELR ++K
Sbjct: 79 NLLRPASEGLNEGEQSYINKRISKVNSELRSFISK 113
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 606 ARCLHPKGESVEEAPFRDLEVD 671
+RCL ++V+EA RDLE++
Sbjct: 22 SRCLGFAAQNVDEANLRDLEIE 43
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 296 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 394
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +1
Query: 526 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 624
+R++ ++ + +A ++ C GI +R+VC R
Sbjct: 398 VRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,473
Number of Sequences: 5004
Number of extensions: 61298
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -