Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00102
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 127 9e-30
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 126 1e-29
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 124 5e-29
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 3.5
06_03_0290 - 19193707-19193752,19193822-19194090 28 6.0
04_03_0670 - 18544745-18545119,18545319-18545551,18546377-185464... 28 6.0
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 8.0
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 127 bits (306), Expect = 9e-30
Identities = 56/94 (59%), Positives = 75/94 (79%)
Frame = +2
Query: 221 KVFPQIQINRRNVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 400
+ + +I++ +VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138
Query: 401 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 502
CIGFT + ++TCYAQ +Q+R IR+KM EI+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIM 172
Score = 107 bits (257), Expect = 8e-24
Identities = 55/94 (58%), Positives = 71/94 (75%), Gaps = 2/94 (2%)
Frame = +3
Query: 42 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 221
VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 222 RSFRKFRLIAE--MCKDVMCSATSTAWTSQPISS 317
+++RK RL AE K+V+ + ++T+ + S
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRS 112
Score = 72.9 bits (171), Expect = 2e-13
Identities = 30/57 (52%), Positives = 47/57 (82%)
Frame = +1
Query: 514 TNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHG 684
++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F++ KLME+HG
Sbjct: 177 SSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHG 233
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 126 bits (305), Expect = 1e-29
Identities = 56/100 (56%), Positives = 76/100 (76%)
Frame = +2
Query: 221 KVFPQIQINRRNVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 400
+ + ++++ +VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 401 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRTSLT 520
CIGFT + ++TCYAQ +Q+R IR+KM EI+ + T
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQAST 178
Score = 106 bits (254), Expect = 2e-23
Identities = 51/71 (71%), Positives = 61/71 (85%)
Frame = +3
Query: 42 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 221
VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 222 RSFRKFRLIAE 254
+++RK RL AE
Sbjct: 79 QAYRKVRLRAE 89
Score = 71.7 bits (168), Expect = 5e-13
Identities = 30/54 (55%), Positives = 45/54 (83%)
Frame = +1
Query: 523 ELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHG 684
+L+E+V+K IP+ I K+IEK+ I+PL++V IRKVK+LK P+F++ KLME+HG
Sbjct: 180 DLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHG 233
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 124 bits (300), Expect = 5e-29
Identities = 55/94 (58%), Positives = 74/94 (78%)
Frame = +2
Query: 221 KVFPQIQINRRNVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 400
+ + +I++ +VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 401 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 502
CIGFT + ++TCYAQ +Q+R IR+KM EI+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIM 172
Score = 107 bits (258), Expect = 6e-24
Identities = 56/94 (59%), Positives = 71/94 (75%), Gaps = 2/94 (2%)
Frame = +3
Query: 42 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 221
VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 222 RSFRKFRLIAE--MCKDVMCSATSTAWTSQPISS 317
+++RK RL AE K+V+ + ++T+ + S
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRS 112
Score = 72.9 bits (171), Expect = 2e-13
Identities = 30/57 (52%), Positives = 47/57 (82%)
Frame = +1
Query: 514 TNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHG 684
++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F++ KLME+HG
Sbjct: 177 SSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHG 233
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 532 EVVNKLIPDSIAKDIEKACHGIYPLRD 612
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 276 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 365
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>04_03_0670 -
18544745-18545119,18545319-18545551,18546377-18546476,
18546842-18546910,18547822-18547900,18547989-18548224
Length = 363
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 225 SFRKFRLIAEMCKDVMCSATSTAWTSQPIS 314
+FR F+ E K VM + +WT QP+S
Sbjct: 149 AFRIFKASQESSKMVMVNQVHESWTGQPVS 178
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 185 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 93
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,538,836
Number of Sequences: 37544
Number of extensions: 432093
Number of successful extensions: 1245
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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