Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00102
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)          95   6e-20
SB_27855| Best HMM Match : Brevenin (HMM E-Value=2)                    31   0.87 
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)         28   6.2  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 42/58 (72%), Positives = 51/58 (87%)
 Frame = +1

Query: 511 VTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHG 684
           V+ ++L+EVVNKLIPDSI KDIEK+C  IYPL DV IRKVKVLK+P+F+I KLME+HG
Sbjct: 59  VSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMHG 116



 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 38/56 (67%), Positives = 47/56 (83%)
 Frame = +2

Query: 341 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITR 508
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT YA+HTQ++AIRKKM +IITR
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITR 57


>SB_27855| Best HMM Match : Brevenin (HMM E-Value=2)
          Length = 306

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
 Frame = -2

Query: 370 LHINVGFDESLPFFNHPPELIGCEVHAVEVAEHITSLHISAINLNLRKD--LSASVSACR 197
           LH+N     +L   NH  ++IG +   +  A  I S H S++NL+++K+    +S+ A R
Sbjct: 198 LHMNGSQRSNL---NHTSDIIGSQKSNLNNASQIISSHKSSLNLSVKKEEKKRSSIMARR 254

Query: 196 SARETSKTLPFNPSEAIFVPWVRLTSVVPTCLLLN 92
             R   + L F   + + +        +  C+LLN
Sbjct: 255 WKRFRRRLLKFTNGKVMEI-------FIIVCILLN 282


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -2

Query: 235 LRKDLSASVSACRSARETSKTLPFNPSEAIFVPWVRLTSVVPTCLLLNIDGALTSYQSLR 56
           LRK L    S  +  RE  + L FNP E+ +V            L + ++  +   +SL+
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYVLQAESLKKANNVLQIELEELIKKEKSLK 361


>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 39  IVDPFTRKDWYDVKAPSMFSKRQ 107
           +V+P+  KDW D    SMFS RQ
Sbjct: 98  LVEPWRWKDWEDFTQSSMFSGRQ 120


>SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)
          Length = 882

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = +1

Query: 430 EPTQDVLRPAHSGQSNQKENV*NHYTHVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 609
           EPT D  RP+H   ++      +    +   ELR+ + +  P +   D  +  +   P+ 
Sbjct: 276 EPTPDPSRPSHRPGADNLTR--DDIRQIIQQELRKELRRSNPPNQNYDRNRRTYTGIPIS 333

Query: 610 DVCIRKVKVLKRPR 651
              IR+ ++ +RPR
Sbjct: 334 SKYIREGRIEERPR 347


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,398,256
Number of Sequences: 59808
Number of extensions: 495466
Number of successful extensions: 1440
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)