Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00102
         (686 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...   140   5e-35
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    27   0.55 
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   5.2  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   6.8  
EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.           23   9.0  
AY344814-1|AAR03842.1|  286|Anopheles gambiae LRR Toll protein.        23   9.0  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score =  140 bits (338), Expect = 5e-35
 Identities = 64/94 (68%), Positives = 77/94 (81%)
 Frame = +2

Query: 227 FPQIQINRRNVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 406
           F + ++   +V GR+VL NFHGM LTTDKLR MV KWQTLIE ++DVKTTDG++LRVFCI
Sbjct: 84  FRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVNKWQTLIECSVDVKTTDGFMLRVFCI 143

Query: 407 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITR 508
           GFT KDS+SQRKTCYAQH+Q++ IR KM  II R
Sbjct: 144 GFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKR 177



 Score =  133 bits (321), Expect = 6e-33
 Identities = 65/95 (68%), Positives = 76/95 (80%), Gaps = 2/95 (2%)
 Frame = +3

Query: 39  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 218
           +VDPFTRKDWYDVKAP+MF  RQ G TLVNRTQGTKIAS+GLKGRVFEVSLADLQ + DA
Sbjct: 21  VVDPFTRKDWYDVKAPNMFKNRQSGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDA 80

Query: 219 ERSFRKFRLIAEMC--KDVMCSATSTAWTSQPISS 317
           ERSFRKF+L+AE    +DV+ +    A T+  + S
Sbjct: 81  ERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRS 115



 Score = 92.7 bits (220), Expect = 1e-20
 Identities = 41/58 (70%), Positives = 51/58 (87%)
 Frame = +1

Query: 511 VTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHG 684
           +T+++L+ VV KL+PDSIAKDIEKAC  +YPL DV IRKVKVLK+PRF++S LMELHG
Sbjct: 179 ITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHG 236


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 27.1 bits (57), Expect = 0.55
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 597 LPSARCLHPKGESVEEAPFRDLEVDGTS 680
           +P   C H  G ++E+A    LE DGT+
Sbjct: 557 MPPKGCSHDDGPALEKAQLYQLESDGTA 584


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 627 LSDANIAQRVDAMAGLLDVLGNGVRNQLV 541
           L+ AN  QR++    L D++G+  RN+++
Sbjct: 560 LAIANALQRINTPKYLYDIIGDYFRNRVL 588


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = -2

Query: 652 NGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSP 536
           NG    +   G  H   G    RPSR    ++  S C P
Sbjct: 146 NGLGLEVLNIGTSHTFRGCGSARPSRIDVAFASPSICRP 184


>EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +2

Query: 254 NVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 343
           ++QG+ V      +DL+++KL +M  ++Q+
Sbjct: 205 DIQGQVVFAKLKTLDLSSNKLAFMGPEFQS 234


>AY344814-1|AAR03842.1|  286|Anopheles gambiae LRR Toll protein.
          Length = 286

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +2

Query: 254 NVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 343
           ++QG+ V      +DL+++KL +M  ++Q+
Sbjct: 130 DIQGQVVFAKLKTLDLSSNKLAFMGPEFQS 159


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,720
Number of Sequences: 2352
Number of extensions: 16465
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)