Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00102
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   113   1e-25
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical ...    29   4.1  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  113 bits (271), Expect = 1e-25
 Identities = 53/71 (74%), Positives = 62/71 (87%)
 Frame = +3

Query: 42  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 221
           VDPF+RK+WYD+KAP+MF+ RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL    ++E
Sbjct: 20  VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL---NNSE 76

Query: 222 RSFRKFRLIAE 254
             FRKF+LIAE
Sbjct: 77  ADFRKFKLIAE 87



 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 48/94 (51%), Positives = 62/94 (65%)
 Frame = +2

Query: 227 FPQIQINRRNVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 406
           F + ++   +VQG+NVL NFH M +T DKL  +VKKW TLIEAN  VKTTDGY LRVF I
Sbjct: 79  FRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVI 138

Query: 407 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITR 508
            FT K     +KT Y + +++R IR +M   I +
Sbjct: 139 AFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEK 172



 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 35/58 (60%), Positives = 48/58 (82%)
 Frame = +1

Query: 511 VTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHG 684
           VT  +L+EVV+KLIPDSI KDIEK C  +YPL++V IRKVK++KRP+ ++ +L +LHG
Sbjct: 174 VTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLHG 231


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 670 STSRSRNG--ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 530
           S+S S N   ASST S     +    R   +P+  PWQ  Q S  +PPP
Sbjct: 94  SSSYSGNSLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142


>AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.3 protein.
          Length = 688

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 292 AVEVAEHITSLHISAINLNLRKD 224
           A+ +  HI+S H+  INLN RK+
Sbjct: 147 ALSIFRHISSNHLEIINLNFRKE 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,244,532
Number of Sequences: 27780
Number of extensions: 359281
Number of successful extensions: 1072
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)