Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00102
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   128   4e-30
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           127   8e-30
At3g52640.1 68416.m05799 nicastrin-related contains weak similar...    30   1.3  
At2g46530.1 68415.m05802 transcriptional factor B3 family protei...    30   1.3  
At5g42470.1 68418.m05170 expressed protein low similarity to BRE...    28   5.0  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    28   6.7  
At5g49880.1 68418.m06177 mitotic checkpoint family protein simil...    27   8.8  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  128 bits (308), Expect = 4e-30
 Identities = 56/94 (59%), Positives = 74/94 (78%)
 Frame = +2

Query: 227 FPQIQINRRNVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 406
           + +I++   +VQGRNVLC F GMD TTDKLR +VKKWQTLIEA++DVKTTD Y LR+FCI
Sbjct: 81  YRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCI 140

Query: 407 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITR 508
            FT + +   ++TCYAQ +Q+R IR+KM +I+ R
Sbjct: 141 AFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVR 174



 Score =  110 bits (265), Expect = 7e-25
 Identities = 57/94 (60%), Positives = 70/94 (74%), Gaps = 2/94 (2%)
 Frame = +3

Query: 42  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 221
           VDPF++KDWYDVKAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D  
Sbjct: 21  VDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDED-- 78

Query: 222 RSFRKFRLIAE--MCKDVMCSATSTAWTSQPISS 317
            ++RK RL AE    ++V+C      +T+  + S
Sbjct: 79  NAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRS 112



 Score = 74.1 bits (174), Expect = 8e-14
 Identities = 30/57 (52%), Positives = 48/57 (84%)
 Frame = +1

Query: 514 TNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHG 684
           ++ +L+++V K IP++I ++IEKA  GIYPL++V IRKVK+LK P+F++ KLM++HG
Sbjct: 177 SSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHG 233


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  127 bits (306), Expect = 8e-30
 Identities = 56/94 (59%), Positives = 74/94 (78%)
 Frame = +2

Query: 227 FPQIQINRRNVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 406
           + +I++   +VQGRNVL  F GMD TTDKLR +VKKWQTLIEA++DVKTTDGY LR+FCI
Sbjct: 81  YRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCI 140

Query: 407 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITR 508
            FT + +   ++TCYAQ +Q+R IR+KM EI+ +
Sbjct: 141 AFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVK 174



 Score =  105 bits (252), Expect = 3e-23
 Identities = 52/71 (73%), Positives = 58/71 (81%)
 Frame = +3

Query: 42  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 221
           VDPF++KDWYDVKAP  F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D  
Sbjct: 21  VDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78

Query: 222 RSFRKFRLIAE 254
            ++RK RL AE
Sbjct: 79  NAYRKIRLRAE 89



 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 32/57 (56%), Positives = 48/57 (84%)
 Frame = +1

Query: 514 TNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHG 684
           ++ +L+E+V K IP++I ++IEKA  GIYPL++V IRKVK+LK P+F++ KLME+HG
Sbjct: 177 SSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHG 233


>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 676

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -2

Query: 502 NDFTH-FLSDCSDLSVLGVARLA--LAQGVLIGETNAEDT*NVSIGCLHINVGFDESL 338
           N F H  L D S+++   V   A  +A+ + I  ++ +DT N ++G +H+N  F E L
Sbjct: 430 NKFYHSHLDDLSNINSSSVVAAASVVARTLYILASDNKDTSNSALGSIHVNASFVEEL 487


>At2g46530.1 68415.m05802 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
           domain
          Length = 601

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 349 DESLPFFNHPPELIGCEVHAVEV-AEHITSLHISAINLNLRKDLSASVS 206
           D+ +P FN PP+++ C V +V + AEH T    + I L   +D S   S
Sbjct: 61  DQEIPVFNLPPKIL-CRVLSVTLKAEHETDEVYAQITLQPEEDQSEPTS 108


>At5g42470.1 68418.m05170 expressed protein low similarity to BRE
           alpha b isoform [Homo sapiens] GI:16326573
          Length = 382

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 334 FFNHPPELIGCEVHAVEVAEHITSLHISAINLNLRKDLSASVSACRSA 191
           +  H  E +  ++H    A  +    I A++LNL + L A  + CR A
Sbjct: 247 YLPHLEETLERQIHEAVAAIDLRRSFIEALSLNLGRPLEADPTFCRKA 294


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 173  SSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLN 27
            S LQS RS F +L  + K  A +   ++ + L++V +  S+W+    LN
Sbjct: 1576 SWLQSNRSVFDTLVLIWKSPARISRLQNEQELNLVQVKESKWLVKCFLN 1624


>At5g49880.1 68418.m06177 mitotic checkpoint family protein similar
           to mitotic checkpoint protein isoform MAD1a [Homo
           sapiens] GI:4580767; contains Pfam profile PF05557:
           Mitotic checkpoint protein
          Length = 726

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 251 RNVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLR 394
           R  +  + L  FH + L+ +KL   +  W++L+     V   D  V+R
Sbjct: 318 RRERAESELSKFHDLQLSMEKLENELSSWKSLLNDIPGVSCPDDIVMR 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,456,614
Number of Sequences: 28952
Number of extensions: 337854
Number of successful extensions: 983
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)