Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00100
(575 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 53 3e-08
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 28 0.85
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 27 2.0
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 2.6
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 27 2.6
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 26 4.5
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 25 6.0
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.0
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 25 7.9
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 52.8 bits (121), Expect = 3e-08
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Frame = +2
Query: 275 VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQ----FITSKEESQRPDDGELDG 442
V ++A+RK W KFG A G + TT+V E+V ++ + T+KEE Q D+ L
Sbjct: 61 VQHAVAERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQ--DEAALAA 118
Query: 443 LK-PPSSNVIFKCRTCQGDHLT 505
K + + +CR C+G+H T
Sbjct: 119 AKVKAKGSSVVRCRACKGNHFT 140
Score = 35.1 bits (77), Expect = 0.007
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +3
Query: 126 WADEVEIDQGVLPPPSEVVEN--GLKIVTEYKYDNDNKKVKIVRTTKLKNVLFQRV 287
WAD+ + G+ P + +N G K + E++ D++ KKVK+ R + K V+ +RV
Sbjct: 9 WADDEDYGTGL--PSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRVIR-KTVITERV 61
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 28.3 bits (60), Expect = 0.85
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Frame = +2
Query: 230 QESENCQD--NKIEKRVVSKSIAKRKTWSKFGDSASD------KPGPNPATTNVAEDVFM 385
+E ++ +D N+ +K+ KS RK + G S+S P+TTN + +
Sbjct: 1215 EEEQSSRDFVNRTKKKPRGKSTGTRKPRAIAGSSSSTAVKKEASSESKPSTTNRKQQTLL 1274
Query: 386 QFITSKEESQRPD 424
+F SKE + D
Sbjct: 1275 EFAASKEPEKSSD 1287
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 165 PPSEVVEN-GLKIVTEYKYDNDNKKVKIVRTTKLKNVLFQRVLP 293
P + EN G KI+ Y+++ +K +VR +LKN ++ R +P
Sbjct: 25 PELGIKENLGRKII--YRFNGVSKPPLVVRDPRLKNPIYARGIP 66
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 26.6 bits (56), Expect = 2.6
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 150 QGVLPPPSEVVENGLKIVTEYKYDNDNKKVKI--VRTTKLKNVLFQRVLPNVKLGANLEI 323
+ V+ P + +NG+ I K+D D KK+ I V TTK + F + V N EI
Sbjct: 232 EDVIEPKTFHYKNGISI--SMKFDKDQKKLFINDVSTTKYDLLTFSGAIHTVSSLINPEI 289
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 135 EVEIDQGVLPPPSEVVENGLKIVTEYKY 218
EVE++ V+ P S EN + V +Y Y
Sbjct: 114 EVEVNSEVVKPDSATTENENRYVNQYNY 141
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 4.5
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Frame = +3
Query: 195 KIVTEYKYDNDNKKVK------IVRTTKLKNVLFQRVLPNVKLGANLEIQ 326
KI + YD DN ++ V+T L LFQ LPN + +N I+
Sbjct: 24 KIKEVHIYDFDNVRLNPWKDRMSVKTNSLLQTLFQTPLPNANIWSNQAIR 73
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.4 bits (53), Expect = 6.0
Identities = 18/80 (22%), Positives = 31/80 (38%)
Frame = +2
Query: 230 QESENCQDNKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEE 409
+ ++ + IEK V K AKRK + + G K P E+ + +
Sbjct: 173 KSAQKLNNQPIEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELSDEETNEDDLLGQSP 232
Query: 410 SQRPDDGELDGLKPPSSNVI 469
+ D +D P +S+ I
Sbjct: 233 TACTTDANIDNSIPENSDKI 252
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 6.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 184 STTSEGGGSTPWSISTSSAQEA*NSSATGMS 92
STTS +TP + S+SS+ + +SS++ S
Sbjct: 131 STTSSSSSATPSTTSSSSSSSSSSSSSSSKS 161
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 230 QESENCQDNKIEKRVVSKSIAKRKTWSKFGDSAS 331
+E++ C+DNK++ R +S S +K K SA+
Sbjct: 635 EEAQRCRDNKVKDRDLSFSPVFQKFPLKVNTSAT 668
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,860
Number of Sequences: 5004
Number of extensions: 39233
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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