Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00100
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1015 + 33512023-33512359,33513550-33514082                       45   4e-05
02_05_1014 + 33510108-33510471,33510857-33511362                       34   0.071
12_01_0964 + 9685989-9686459                                           29   3.5  
04_03_0872 + 20452534-20453271                                         28   4.6  

>02_05_1015 + 33512023-33512359,33513550-33514082
          Length = 289

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +2

Query: 257 KIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGEL 436
           KI +  +SKS  +R++W KFGD+  +  G      +  E V  +      +++ P     
Sbjct: 65  KIARARLSKSAIERRSWPKFGDAVQEDVGARLTMVSTEEIVLERPRAPGSKAEEP-SASG 123

Query: 437 DGLKPPSSNVIFKCRTC--QGDHLT 505
           D L   S  V+  CRTC  +GDH T
Sbjct: 124 DPLASKSGAVLMVCRTCGKKGDHWT 148



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
 Frame = +3

Query: 126 WADEVEIDQG----VLPPP--SEVVENGLKIVTEYKYDNDNKKVKIVRTTKLKNVLFQRV 287
           W +  E D+G    +LPP   S   ENG K V EY++D+   KVK+ RT +++ +   R+
Sbjct: 12  WGELEEDDEGDLDFLLPPRVVSGPDENGFKKVVEYRFDDKGNKVKVTRTFRVRKIARARL 71


>02_05_1014 + 33510108-33510471,33510857-33511362
          Length = 289

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +3

Query: 165 PPSEVV---ENGLKIVTEYKYDNDNKKVKIVRTTKLKNVLFQRV 287
           PP  V+   ENG+K   EY+ + + K V++  TT+++ V   RV
Sbjct: 36  PPRVVIGPDENGIKKTVEYRLNEEGKAVRVTTTTRVREVARTRV 79



 Score = 30.7 bits (66), Expect = 0.87
 Identities = 17/83 (20%), Positives = 39/83 (46%)
 Frame = +2

Query: 257 KIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGEL 436
           ++ +  V+K  A+R+ W+KFGD+A +       T    E++ ++         + +D  +
Sbjct: 73  EVARTRVTKRAAERRGWAKFGDAAHNDDAGARLTVVSPEEIVLE--RPSAPGSKSEDPLI 130

Query: 437 DGLKPPSSNVIFKCRTCQGDHLT 505
             L   ++ ++ +    +G H T
Sbjct: 131 PALDKGAALMVCRICNAKGKHWT 153


>12_01_0964 + 9685989-9686459
          Length = 156

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 165 VEVHLGQSRPHQPRKPEILQQQACRNIYFIHQLLFCNL--SYEVIIDR 28
           VE+   QS   Q R  +++QQQ C+ +  I Q   C    S +VI+ +
Sbjct: 58  VEIPFFQSPVFQLRNCQVMQQQCCQQLRMIAQQSHCQAVSSVQVIVQQ 105


>04_03_0872 + 20452534-20453271
          Length = 245

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 406 FLTGDELHEDIFSYISSSRVRP 341
           F+ GDELHED F + SS    P
Sbjct: 31  FVAGDELHEDDFLFSSSPAAPP 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,703,094
Number of Sequences: 37544
Number of extensions: 250640
Number of successful extensions: 787
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)