Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00100
(575 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 40 0.002
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083) 32 0.39
SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5) 31 0.89
SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46) 30 1.6
SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016) 29 2.7
SB_17508| Best HMM Match : Herpes_gE (HMM E-Value=8.5) 28 6.3
SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06) 27 8.3
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32) 27 8.3
SB_6645| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_6595| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +3
Query: 144 IDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTTKLK 266
+ + +PP SEV E KIVTEYK D++ K KI+ T +++
Sbjct: 71 LSESQIPPSSEVREGENKIVTEYKRDDEGKLQKIITTYRVE 111
Score = 33.9 bits (74), Expect = 0.096
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 398 SKEESQR--PDDGELDGLKPPSSNVIFKCRTCQGDHLT 505
+KE ++R PD E D LK S I +CR C+GDH T
Sbjct: 116 AKEIAKRKNPDATEEDPLKKLSGQKIVQCRICKGDHWT 153
>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
Length = 1266
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/69 (23%), Positives = 36/69 (52%)
Frame = +2
Query: 233 ESENCQDNKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEES 412
E + C+++ + + + K + SK D + G +PA + ED+ M +++ +S
Sbjct: 215 EKQKCENSAVIANGSTDDVTKSEDVSKSNDVITSSTGSSPAHSPKPEDLTM--LSTPPKS 272
Query: 413 QRPDDGELD 439
++PDD ++
Sbjct: 273 RQPDDESIN 281
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/69 (21%), Positives = 36/69 (52%)
Frame = +2
Query: 233 ESENCQDNKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEES 412
E + C+++ + + + K + SK D + G +PA + ED+ M +++ +S
Sbjct: 608 EKQKCENSAVIANGSTDDVTKSEDVSKSNDVITSSTGSSPAHSPKPEDLTM--LSTPPKS 665
Query: 413 QRPDDGELD 439
++P+D ++
Sbjct: 666 RQPEDESIN 674
>SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5)
Length = 297
Score = 30.7 bits (66), Expect = 0.89
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 263 EKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDG 442
E+ + +KS + K+ S GDS S P P+ + + ++V Q ++ ++ D E G
Sbjct: 74 EEAIGAKSENEEKSESSSGDSESPPPKPHVSAKELIDEVVKQEMSKHKKKNNDGDSEETG 133
>SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46)
Length = 521
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Frame = +2
Query: 233 ESENCQDNKIEKRV-VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITS--- 400
ES + K KR + S +KT ++ D +DK P+P+ + D + I
Sbjct: 221 ESADENQPKTSKRPRIGASPVGQKTAARVSDQPTDKSAPSPSGGKTSSDNVLSAIAERLN 280
Query: 401 -KEESQRPDDGELDGLKPPSSNVIFK 475
KE++++ D +L L +N+IFK
Sbjct: 281 MKEKTEKSVDAQLADL---VNNLIFK 303
>SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)
Length = 999
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +2
Query: 233 ESENCQDNKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEES 412
E E ++ + E V +S + K ++ +KP NP V E+ F++ ++
Sbjct: 234 EEEEDEEAEEELSGVPESNLLNEEEMKEEETHDEKPEENPEVPEVNEEDFIRAADARRRG 293
Query: 413 QRPDDGELDG 442
+ D ELDG
Sbjct: 294 EDGDTEELDG 303
>SB_17508| Best HMM Match : Herpes_gE (HMM E-Value=8.5)
Length = 394
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 129 ADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTTKL 263
+D +++ G LPP +E LK VTE + D +N V+ V T L
Sbjct: 109 SDIFQMNVGNLPP-NESATLQLKFVTELEVDEENGTVQFVLPTVL 152
>SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06)
Length = 159
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = +2
Query: 425 DGELDG--LKPPSSNVIFKCRTCQGDH 499
DG+ G KPP S + KC C G H
Sbjct: 100 DGDTTGNPRKPPQSATVSKCYRCDGKH 126
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 236 SENCQDNKIEKRVVSKSIAKRKTWSKFGDS 325
S+N +DNK EK +VS KR+ W +F S
Sbjct: 387 SDN-KDNKKEKPLVSYQDFKREAWGRFARS 415
>SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32)
Length = 1077
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 284 SIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 448
S A RKT S A+ K G A T+ + KE + D+G++DG K
Sbjct: 859 SKASRKTVSNVAFKAAAKAGAVAAVTSAIVGGAFFYKDMKELKKARDEGKMDGKK 913
>SB_6645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/68 (23%), Positives = 30/68 (44%)
Frame = +2
Query: 230 QESENCQDNKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEE 409
Q+ E +++++ + +K K+K K GD + NP N E + E+
Sbjct: 18 QDEEIDENDEVAENTATKKKKKKKKKKKGGDGEENADPNNPLVMN-GEGKDAEKAEGDEQ 76
Query: 410 SQRPDDGE 433
+ D+GE
Sbjct: 77 EKEDDEGE 84
>SB_6595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 186 FQPLQKVVEVHLGQSRPHQPRKPEIL 109
F L+KV++ HL S PR P ++
Sbjct: 267 FSALRKVIKQHLADSSVRSPRSPHVI 292
>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = +2
Query: 425 DGELDG--LKPPSSNVIFKCRTCQGDH 499
DG+ G KPP S + KC C G H
Sbjct: 1230 DGDTTGNPRKPPQSATVSKCYRCDGKH 1256
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,933,845
Number of Sequences: 59808
Number of extensions: 295297
Number of successful extensions: 859
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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