Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00100
(575 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U96074-1|AAC78728.1| 320|Homo sapiens translation initiation fa... 84 3e-16
CR457134-1|CAG33415.1| 320|Homo sapiens EIF3S4 protein. 84 3e-16
BT006889-1|AAP35535.1| 320|Homo sapiens eukaryotic translation ... 84 3e-16
BC008469-1|AAH08469.1| 320|Homo sapiens eukaryotic translation ... 84 3e-16
BC000733-1|AAH00733.1| 320|Homo sapiens eukaryotic translation ... 84 3e-16
AF094850-1|AAG15419.1| 320|Homo sapiens eukaryotic translation ... 84 3e-16
AF092453-1|AAG15396.1| 320|Homo sapiens eukaryotic translation ... 84 3e-16
AF020833-1|AAB71866.1| 320|Homo sapiens eukaryotic translation ... 84 3e-16
BC031222-1|AAH31222.1| 429|Homo sapiens serum response factor b... 32 1.7
BC017102-1|AAH17102.1| 314|Homo sapiens SRFBP1 protein protein. 32 1.7
AY611630-1|AAU25829.2| 429|Homo sapiens SRF-dependent transcrip... 32 1.7
AK058015-1|BAB71631.1| 427|Homo sapiens protein ( Homo sapiens ... 31 2.2
AY386363-1|AAR25620.1| 802|Homo sapiens breast cancer-associate... 29 8.9
AL449223-4|CAI16627.1| 1137|Homo sapiens Smg-7 homolog, nonsense... 29 8.9
AL137800-13|CAI19486.1| 1137|Homo sapiens Smg-7 homolog, nonsens... 29 8.9
AB085674-1|BAC53621.1| 1137|Homo sapiens SMG-7 protein. 29 8.9
>U96074-1|AAC78728.1| 320|Homo sapiens translation initiation
factor eIF3 p44 subunit protein.
Length = 320
Score = 84.2 bits (199), Expect = 3e-16
Identities = 41/83 (49%), Positives = 52/83 (62%)
Frame = +2
Query: 257 KIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGEL 436
+IE R SK++A+RK W KFG+S D PGPN ATT V++DV M FITSKE+ + E
Sbjct: 86 RIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EE 143
Query: 437 DGLKPPSSNVIFKCRTCQGDHLT 505
D + I CR C+GDH T
Sbjct: 144 DPMNKLKGQKIVSCRICKGDHWT 166
Score = 50.4 bits (115), Expect = 4e-06
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3
Query: 159 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTTKLK 266
LPPP EV+ +K VTEYK D D KK KIVRT +++
Sbjct: 53 LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88
>CR457134-1|CAG33415.1| 320|Homo sapiens EIF3S4 protein.
Length = 320
Score = 84.2 bits (199), Expect = 3e-16
Identities = 41/83 (49%), Positives = 52/83 (62%)
Frame = +2
Query: 257 KIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGEL 436
+IE R SK++A+RK W KFG+S D PGPN ATT V++DV M FITSKE+ + E
Sbjct: 86 RIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EE 143
Query: 437 DGLKPPSSNVIFKCRTCQGDHLT 505
D + I CR C+GDH T
Sbjct: 144 DPMNKLKGQKIVSCRICKGDHWT 166
Score = 50.4 bits (115), Expect = 4e-06
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3
Query: 159 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTTKLK 266
LPPP EV+ +K VTEYK D D KK KIVRT +++
Sbjct: 53 LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88
>BT006889-1|AAP35535.1| 320|Homo sapiens eukaryotic translation
initiation factor 3, subunit 4 delta, 44kDa protein.
Length = 320
Score = 84.2 bits (199), Expect = 3e-16
Identities = 41/83 (49%), Positives = 52/83 (62%)
Frame = +2
Query: 257 KIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGEL 436
+IE R SK++A+RK W KFG+S D PGPN ATT V++DV M FITSKE+ + E
Sbjct: 86 RIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EE 143
Query: 437 DGLKPPSSNVIFKCRTCQGDHLT 505
D + I CR C+GDH T
Sbjct: 144 DPMNKLKGQKIVSCRICKGDHWT 166
Score = 50.4 bits (115), Expect = 4e-06
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3
Query: 159 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTTKLK 266
LPPP EV+ +K VTEYK D D KK KIVRT +++
Sbjct: 53 LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88
>BC008469-1|AAH08469.1| 320|Homo sapiens eukaryotic translation
initiation factor 3, subunit 4 delta, 44kDa protein.
Length = 320
Score = 84.2 bits (199), Expect = 3e-16
Identities = 41/83 (49%), Positives = 52/83 (62%)
Frame = +2
Query: 257 KIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGEL 436
+IE R SK++A+RK W KFG+S D PGPN ATT V++DV M FITSKE+ + E
Sbjct: 86 RIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EE 143
Query: 437 DGLKPPSSNVIFKCRTCQGDHLT 505
D + I CR C+GDH T
Sbjct: 144 DPMNKLKGQKIVSCRICKGDHWT 166
Score = 50.4 bits (115), Expect = 4e-06
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3
Query: 159 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTTKLK 266
LPPP EV+ +K VTEYK D D KK KIVRT +++
Sbjct: 53 LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88
>BC000733-1|AAH00733.1| 320|Homo sapiens eukaryotic translation
initiation factor 3, subunit 4 delta, 44kDa protein.
Length = 320
Score = 84.2 bits (199), Expect = 3e-16
Identities = 41/83 (49%), Positives = 52/83 (62%)
Frame = +2
Query: 257 KIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGEL 436
+IE R SK++A+RK W KFG+S D PGPN ATT V++DV M FITSKE+ + E
Sbjct: 86 RIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EE 143
Query: 437 DGLKPPSSNVIFKCRTCQGDHLT 505
D + I CR C+GDH T
Sbjct: 144 DPMNKLKGQKIVSCRICKGDHWT 166
Score = 50.4 bits (115), Expect = 4e-06
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3
Query: 159 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTTKLK 266
LPPP EV+ +K VTEYK D D KK KIVRT +++
Sbjct: 53 LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88
>AF094850-1|AAG15419.1| 320|Homo sapiens eukaryotic translation
initiation factor 3 subunit p42/p44 protein.
Length = 320
Score = 84.2 bits (199), Expect = 3e-16
Identities = 41/83 (49%), Positives = 52/83 (62%)
Frame = +2
Query: 257 KIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGEL 436
+IE R SK++A+RK W KFG+S D PGPN ATT V++DV M FITSKE+ + E
Sbjct: 86 RIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EE 143
Query: 437 DGLKPPSSNVIFKCRTCQGDHLT 505
D + I CR C+GDH T
Sbjct: 144 DPMNKLKGQKIVSCRICKGDHWT 166
Score = 50.4 bits (115), Expect = 4e-06
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3
Query: 159 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTTKLK 266
LPPP EV+ +K VTEYK D D KK KIVRT +++
Sbjct: 53 LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88
>AF092453-1|AAG15396.1| 320|Homo sapiens eukaryotic translation
initiation factor 3 subunit p42/p44 protein.
Length = 320
Score = 84.2 bits (199), Expect = 3e-16
Identities = 41/83 (49%), Positives = 52/83 (62%)
Frame = +2
Query: 257 KIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGEL 436
+IE R SK++A+RK W KFG+S D PGPN ATT V++DV M FITSKE+ + E
Sbjct: 86 RIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EE 143
Query: 437 DGLKPPSSNVIFKCRTCQGDHLT 505
D + I CR C+GDH T
Sbjct: 144 DPMNKLKGQKIVSCRICKGDHWT 166
Score = 50.4 bits (115), Expect = 4e-06
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3
Query: 159 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTTKLK 266
LPPP EV+ +K VTEYK D D KK KIVRT +++
Sbjct: 53 LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88
>AF020833-1|AAB71866.1| 320|Homo sapiens eukaryotic translation
initiation factor 3 subunit protein.
Length = 320
Score = 84.2 bits (199), Expect = 3e-16
Identities = 41/83 (49%), Positives = 52/83 (62%)
Frame = +2
Query: 257 KIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGEL 436
+IE R SK++A+RK W KFG+S D PGPN ATT V++DV M FITSKE+ + E
Sbjct: 86 RIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EE 143
Query: 437 DGLKPPSSNVIFKCRTCQGDHLT 505
D + I CR C+GDH T
Sbjct: 144 DPMNKLKGQKIVSCRICKGDHWT 166
Score = 50.4 bits (115), Expect = 4e-06
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3
Query: 159 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTTKLK 266
LPPP EV+ +K VTEYK D D KK KIVRT +++
Sbjct: 53 LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88
>BC031222-1|AAH31222.1| 429|Homo sapiens serum response factor
binding protein 1 protein.
Length = 429
Score = 31.9 bits (69), Expect = 1.7
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +2
Query: 215 IRQ**QESENCQDNKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFI 394
+R+ ++ +C + E++ + K K T GD+ +DK P+ T + E VF +
Sbjct: 290 VRRTRKKESSCHSSVKEQKPLEKVFLKEDTGETHGDTRNDKIKPSTETRKL-ESVFFHSL 348
Query: 395 TSKEESQR 418
+ + S+R
Sbjct: 349 SGSKSSRR 356
>BC017102-1|AAH17102.1| 314|Homo sapiens SRFBP1 protein protein.
Length = 314
Score = 31.9 bits (69), Expect = 1.7
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +2
Query: 215 IRQ**QESENCQDNKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFI 394
+R+ ++ +C + E++ + K K T GD+ +DK P+ T + E VF +
Sbjct: 175 VRRTRKKESSCHSSVKEQKPLEKVFLKEDTGETHGDTRNDKIKPSTETRKL-ESVFFHSL 233
Query: 395 TSKEESQR 418
+ + S+R
Sbjct: 234 SGSKSSRR 241
>AY611630-1|AAU25829.2| 429|Homo sapiens SRF-dependent
transcription regulation associated protein protein.
Length = 429
Score = 31.9 bits (69), Expect = 1.7
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +2
Query: 215 IRQ**QESENCQDNKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFI 394
+R+ ++ +C + E++ + K K T GD+ +DK P+ T + E VF +
Sbjct: 290 VRRTRKKESSCHSSVKEQKPLEKVFLKEDTGETHGDTRNDKIKPSTETRKL-ESVFFHSL 348
Query: 395 TSKEESQR 418
+ + S+R
Sbjct: 349 SGSKSSRR 356
>AK058015-1|BAB71631.1| 427|Homo sapiens protein ( Homo sapiens
cDNA FLJ25286 fis, clone STM06909. ).
Length = 427
Score = 31.5 bits (68), Expect = 2.2
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +2
Query: 215 IRQ**QESENCQDNKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFI 394
+R+ ++ +C + E++ + K K T GD+ +DK P+ T + E VF +
Sbjct: 290 VRRTRKKESSCHSSVKEQKPLEKVFLKEDTGETHGDTRNDKIKPSTETRKL-ESVFSHSL 348
Query: 395 TSKEESQR 418
+ + S+R
Sbjct: 349 SGSKSSRR 356
>AY386363-1|AAR25620.1| 802|Homo sapiens breast cancer-associated
antigen SGA-56M protein.
Length = 802
Score = 29.5 bits (63), Expect = 8.9
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = +3
Query: 135 EVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTTKLKNVLFQRVLPNVKLGAN 314
EV DQG PP EV + K +T K ND KK R T+ K +++ K
Sbjct: 220 EVNRDQGRSFPPKEVRRDYSKGITVTK--NDGKKDNNKRKTETKKCTLEKLQETGKQNVA 277
Query: 315 LEIQPAT 335
++++ T
Sbjct: 278 VQVKSQT 284
>AL449223-4|CAI16627.1| 1137|Homo sapiens Smg-7 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1137
Score = 29.5 bits (63), Expect = 8.9
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = +3
Query: 135 EVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTTKLKNVLFQRVLPNVKLGAN 314
EV DQG PP EV + K +T K ND KK R T+ K +++ K
Sbjct: 555 EVNRDQGRSFPPKEVRRDYSKGITVTK--NDGKKDNNKRKTETKKCTLEKLQETGKQNVA 612
Query: 315 LEIQPAT 335
++++ T
Sbjct: 613 VQVKSQT 619
>AL137800-13|CAI19486.1| 1137|Homo sapiens Smg-7 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1137
Score = 29.5 bits (63), Expect = 8.9
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = +3
Query: 135 EVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTTKLKNVLFQRVLPNVKLGAN 314
EV DQG PP EV + K +T K ND KK R T+ K +++ K
Sbjct: 555 EVNRDQGRSFPPKEVRRDYSKGITVTK--NDGKKDNNKRKTETKKCTLEKLQETGKQNVA 612
Query: 315 LEIQPAT 335
++++ T
Sbjct: 613 VQVKSQT 619
>AB085674-1|BAC53621.1| 1137|Homo sapiens SMG-7 protein.
Length = 1137
Score = 29.5 bits (63), Expect = 8.9
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = +3
Query: 135 EVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTTKLKNVLFQRVLPNVKLGAN 314
EV DQG PP EV + K +T K ND KK R T+ K +++ K
Sbjct: 555 EVNRDQGRSFPPKEVRRDYSKGITVTK--NDGKKDNNKRKTETKKCTLEKLQETGKQNVA 612
Query: 315 LEIQPAT 335
++++ T
Sbjct: 613 VQVKSQT 619
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,933,598
Number of Sequences: 237096
Number of extensions: 1426963
Number of successful extensions: 3822
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3814
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -