Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00100
(575 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 51 7e-07
Z71181-3|CAA94896.1| 493|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z78545-3|CAB01767.1| 306|Caenorhabditis elegans Hypothetical pr... 29 3.1
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr... 29 3.1
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr... 29 3.1
U40954-3|AAL00885.1| 171|Caenorhabditis elegans Hypothetical pr... 29 3.1
U40954-2|ABB88226.1| 152|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF067216-10|AAC17519.1| 492|Caenorhabditis elegans Hypothetical... 28 4.1
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical... 27 9.5
AF016686-1|AAB66240.1| 399|Caenorhabditis elegans Hypothetical ... 27 9.5
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 50.8 bits (116), Expect = 7e-07
Identities = 32/82 (39%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +2
Query: 257 KIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGEL 436
K+ + V K +A RK W KFG + GP ATT VAE+V MQF ++ Q D E
Sbjct: 50 KVINKRVPKVVADRKKWVKFGSCKGEPAGPQVATTYVAEEVDMQFTRNRAGEQILDVQED 109
Query: 437 DGLKPPSSNVIFKCRTCQG-DH 499
+S CR C+G DH
Sbjct: 110 KQTAKTTSRE--HCRHCKGNDH 129
>Z71181-3|CAA94896.1| 493|Caenorhabditis elegans Hypothetical
protein K07C5.3 protein.
Length = 493
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 129 ADEVEIDQGVLPPPSEVVE-NGLKIVTEYKYDNDNKKVKIVRTTKLKN 269
AD I +GV P E+ + NGL V E Y+ND +K +T+ KN
Sbjct: 321 ADASIILKGVHPKAPEIFQSNGLDSVIEKYYNNDFEKSAQQKTSSSKN 368
>Z78545-3|CAB01767.1| 306|Caenorhabditis elegans Hypothetical
protein M03B6.4 protein.
Length = 306
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Frame = +2
Query: 293 KRKTWSKFGDSASDKP----GPNPATTNVAE 373
KRKT KFGD A D P NP TT+ E
Sbjct: 21 KRKTTRKFGDDAYDSPKYFMEGNPTTTSTFE 51
>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
protein T19D12.4b protein.
Length = 1015
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 174 EVVENGLKIVTEYKYDNDNKKVKIV 248
+ V+ K+V +YKY NDN +V I+
Sbjct: 394 QYVDFAKKLVAQYKYGNDNTRVGII 418
>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
protein T19D12.4a protein.
Length = 1028
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 174 EVVENGLKIVTEYKYDNDNKKVKIV 248
+ V+ K+V +YKY NDN +V I+
Sbjct: 407 QYVDFAKKLVAQYKYGNDNTRVGII 431
>U40954-3|AAL00885.1| 171|Caenorhabditis elegans Hypothetical
protein ZK813.4a protein.
Length = 171
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -2
Query: 478 TLKDNIAGWWLKTIKLPVIWALTLFLTGD--ELHEDIFSYISSSRVRPRLV 332
T+K NI W++ ++ + L L GD ++++DI I+ R RP++V
Sbjct: 108 TIKRNII--WIEVMEGDIAQTLGLVTVGDVHKIYDDICDIINKHRERPKIV 156
>U40954-2|ABB88226.1| 152|Caenorhabditis elegans Hypothetical
protein ZK813.4b protein.
Length = 152
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -2
Query: 478 TLKDNIAGWWLKTIKLPVIWALTLFLTGD--ELHEDIFSYISSSRVRPRLV 332
T+K NI W++ ++ + L L GD ++++DI I+ R RP++V
Sbjct: 89 TIKRNII--WIEVMEGDIAQTLGLVTVGDVHKIYDDICDIINKHRERPKIV 137
>AF067216-10|AAC17519.1| 492|Caenorhabditis elegans Hypothetical
protein C35E7.3 protein.
Length = 492
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2
Query: 502 QMVSLTCTTLKDNIAGWWLKTIKLP 428
Q V TC K + G LKTIKLP
Sbjct: 91 QRVQCTCCEYKKELVGCHLKTIKLP 115
>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
protein Y51H4A.12 protein.
Length = 1677
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/72 (22%), Positives = 31/72 (43%)
Frame = +2
Query: 239 ENCQDNKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQR 418
E + +K+ V K+ K K + +++PGP P + E ++ + K +S +
Sbjct: 1428 ERFTKREAKKKAVEKAKEKEKKEHRKEPKKANEPGPAPKSEKAVEKA-VEKVEKKPKSPQ 1486
Query: 419 PDDGELDGLKPP 454
+ KPP
Sbjct: 1487 KPPAKPTAQKPP 1498
>AF016686-1|AAB66240.1| 399|Caenorhabditis elegans Hypothetical
protein R07C3.11 protein.
Length = 399
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 159 LPPPSEV-VENGLKIVTEYKYDNDNKKVKIVRTTKLKNVLFQRVLPNVKLGANLEIQPAT 335
LPP + +EN +I TEY +D N+ I+ ++K R++ +L L + +T
Sbjct: 317 LPPSVKSWLENRQEIGTEYTFDISNEDQIILFLDEMKESNADRIVDEAELHVKLRMDNST 376
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,954,684
Number of Sequences: 27780
Number of extensions: 226735
Number of successful extensions: 788
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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