Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00100
(575 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 47 1e-05
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 41 7e-04
At4g20720.1 68417.m03011 dentin sialophosphoprotein-related cont... 28 3.9
At1g05090.1 68414.m00512 dentin sialophosphoprotein-related cont... 28 3.9
At3g57780.1 68416.m06436 expressed protein 28 5.1
At1g52650.1 68414.m05945 F-box family protein contains F-box dom... 28 5.1
At1g67370.1 68414.m07669 meiotic asynaptic mutant 1 (ASY1) ident... 27 6.8
At5g58190.2 68418.m07284 expressed protein contains Pfam profile... 27 9.0
At5g58190.1 68418.m07283 expressed protein contains Pfam profile... 27 9.0
At2g09910.1 68415.m01029 hypothetical protein 27 9.0
At1g19870.1 68414.m02492 calmodulin-binding family protein conta... 27 9.0
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Frame = +2
Query: 257 KIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFIT---SKEESQRPDD 427
+++KR ++K +R++W+KFGD+A ++ + T ED+ ++ I S E
Sbjct: 31 RVQKRALTKQAVERRSWNKFGDAAHEE-SSSYLTMRSTEDIILERIRAPGSNAEQSTVSG 89
Query: 428 GELDGLKPPSSNVIFKCRTCQ--GDHLT 505
+ L P + V+ CR CQ GDH T
Sbjct: 90 DSMSQLGKPGA-VLMVCRLCQKKGDHWT 116
Score = 36.3 bits (80), Expect = 0.015
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +3
Query: 183 ENGLKIVTEYKYDNDNKKVKIVRTTKLK 266
+NG+K V EYK++ ++KKVKI TT+++
Sbjct: 6 QNGVKKVIEYKFNEEDKKVKITTTTRVQ 33
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Frame = +3
Query: 111 EFQASWADEVEIDQGVLPPPSEVV---ENGLKIVTEYKYDNDNKKVKIVRTTKLKNVLFQ 281
+F+ DE E D L PP +V+ ENGLK EYK++++ KVKI T+++ +
Sbjct: 11 KFRWGEMDEDE-DLDFLLPPKQVIGPDENGLKTTIEYKFNDEENKVKITTRTRVRKLASA 69
Query: 282 RV 287
R+
Sbjct: 70 RL 71
Score = 36.7 bits (81), Expect = 0.011
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Frame = +2
Query: 257 KIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFI----TSKEESQRPD 424
K+ ++K +R+ W KFGD+A+++ G + T E++ ++ T +ES+
Sbjct: 65 KLASARLNKRAMERRNWPKFGDAANEEAGSH-LTMVSTEEILLERPRAPGTKADESKATG 123
Query: 425 DGELDGLKPPSSNVIFKCRTC--QGDHLT 505
DG L L + V+ CR C +GDH T
Sbjct: 124 DG-LSQLGKGGA-VLMVCRICHKKGDHWT 150
>At4g20720.1 68417.m03011 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
Length = 729
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/85 (21%), Positives = 32/85 (37%)
Frame = +2
Query: 248 QDNKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDD 427
+ IEK + W+ F SA+ K NP + + F F ++ +
Sbjct: 506 EKKSIEKTPTDVNDDDDDDWNDFASSANSKTPNNPLSQTMESSQFEIFYGHAQDKNGVKE 565
Query: 428 GELDGLKPPSSNVIFKCRTCQGDHL 502
+D + ++V+ CQ D L
Sbjct: 566 QSVDEKQNTDTSVMSDIGKCQEDDL 590
>At1g05090.1 68414.m00512 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor [Homo sapiens]
Length = 706
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/85 (21%), Positives = 32/85 (37%)
Frame = +2
Query: 248 QDNKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDD 427
+ IEK + W+ F SA+ K NP + + F F ++ +
Sbjct: 483 EKKSIEKTPTDVNDDDDDDWNDFASSANSKTPNNPLSQTMESSQFEIFYGHAQDKNGVKE 542
Query: 428 GELDGLKPPSSNVIFKCRTCQGDHL 502
+D + ++V+ CQ D L
Sbjct: 543 QSVDEKQNTDTSVMSDIGKCQEDDL 567
>At3g57780.1 68416.m06436 expressed protein
Length = 670
Score = 27.9 bits (59), Expect = 5.1
Identities = 20/94 (21%), Positives = 37/94 (39%)
Frame = +2
Query: 233 ESENCQDNKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEES 412
E E + K E V S + T SK D + T E + ++E
Sbjct: 36 EQERLKATKEESNV-SVVVDDTTTQSKLSDDDDHAVNDSSEKTEKEETINGLACDDEDEE 94
Query: 413 QRPDDGELDGLKPPSSNVIFKCRTCQGDHLTLIV 514
++ + ELD + ++ + TC+G ++ +V
Sbjct: 95 EKEESKELDAIAHEKTDSVSSPETCEGVNVDKVV 128
>At1g52650.1 68414.m05945 F-box family protein contains F-box domain
Pfam:PF00646
Length = 465
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 198 FLVHFQPLQKVVEVHLGQSRPHQPRKPEILQ 106
FL HF P + +++H+ ++ P Q R PE+ Q
Sbjct: 404 FLEHF-PCLREIKIHMEENGPTQLRVPEVSQ 433
>At1g67370.1 68414.m07669 meiotic asynaptic mutant 1 (ASY1)
identical to meiotic asynaptic mutant 1 [Arabidopsis
thaliana] GI:7939627; contains Pfam profiles PF02301:
DNA-binding HORMA domain, PF04433: SWIRM domain
Length = 596
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 320 DSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELD 439
DS D P+ + + +++ QFI + E Q DDGE+D
Sbjct: 252 DSVHDDQ-PSDSDSEISQTQENQFIVAPVEKQDDDDGEVD 290
>At5g58190.2 68418.m07284 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 528
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 257 KIEKRVVSKSIAKRKTWSKFGDSASDKP--GPNPATTNVAEDV 379
+ RV SK+ +K S GDSASD GPNP+ N E V
Sbjct: 279 RASSRVKSKNSSK--PCSTIGDSASDSSTAGPNPSLYNHPEFV 319
>At5g58190.1 68418.m07283 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 527
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 257 KIEKRVVSKSIAKRKTWSKFGDSASDKP--GPNPATTNVAEDV 379
+ RV SK+ +K S GDSASD GPNP+ N E V
Sbjct: 278 RASSRVKSKNSSK--PCSTIGDSASDSSTAGPNPSLYNHPEFV 318
>At2g09910.1 68415.m01029 hypothetical protein
Length = 985
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = +2
Query: 293 KRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPSS 460
+++ W++F D P V E +F EE P DGE PP S
Sbjct: 283 RKRMWTEFPDRYRPSPEFPMEFEGVLEAIFQAQRPPIEEETHPLDGEAATSNPPVS 338
>At1g19870.1 68414.m02492 calmodulin-binding family protein contains
Pfam profile: PF00612 IQ calmodulin-binding motif
Length = 794
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 323 SASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPSS 460
+ SDK PN A + E+ F + + +P + + D KP S+
Sbjct: 287 ATSDKSEPNAAAQKLLENKFAKHLMESTPKTKPINIKCDPTKPSSA 332
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,061,694
Number of Sequences: 28952
Number of extensions: 205408
Number of successful extensions: 656
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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