Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00098
         (579 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    24   1.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   3.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   3.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   4.3  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 18/79 (22%), Positives = 37/79 (46%)
 Frame = +2

Query: 176 FFVHRNWDMPVSFVNVRNVG*CY*IMFVILKA*RVIYYVASQSVIGNGDIVASLFSSKTK 355
           FF+   +D P +     ++  CY  + +++K   VIY++   ++     + ASL  ++  
Sbjct: 25  FFITPWYDFPTNQKYYPSLAKCYACLLMVVKILWVIYWLQDDAL---KSVYASLLCTEKI 81

Query: 356 MHN*FYTSGISSLIVTLYK 412
                YT+      VT++K
Sbjct: 82  FLFAIYTNLSILTTVTIFK 100


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 225 LTFTNETGISQFLWTKKCKRHTMT 154
           L   ++T I+  +WT KC+R   T
Sbjct: 469 LWLLSQTWITLHIWTPKCERLART 492


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 225 LTFTNETGISQFLWTKKCKRHTMT 154
           L   ++T I+  +WT KC+R   T
Sbjct: 469 LWLLSQTWITLHIWTPKCERLART 492


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 225 LTFTNETGISQFLWTKKCKRHTMT 154
           L   ++T I+  +WT KC+R   T
Sbjct: 469 LWLLSQTWITLHIWTPKCERLART 492


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 225 LTFTNETGISQFLWTKKCKRHTMT 154
           L   ++T I+  +WT KC+R   T
Sbjct: 469 LWLLSQTWITLHIWTPKCERLART 492


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 205 RFVCKRKERGLMLLNYVCNTQGIACHI 285
           ++VCK K+ G  +++     Q  AC +
Sbjct: 71  QYVCKAKDEGSCIIDKTHRNQCRACRL 97


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 205 RFVCKRKERGLMLLNYVCNTQGIACHI 285
           ++VCK K+ G  +++     Q  AC +
Sbjct: 71  QYVCKAKDEGSCIIDKTHRNQCRACRL 97


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 5/15 (33%), Positives = 13/15 (86%)
 Frame = +2

Query: 137 FEFSFIVIVCLLHFF 181
           F ++FI+++C+ +F+
Sbjct: 103 FYYAFIILLCVYYFY 117


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,711
Number of Sequences: 336
Number of extensions: 2669
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)