Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00098
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0808 + 7418878-7420476                                           28   6.2  
01_06_1642 + 38857326-38857581,38858577-38858818,38859001-388600...    27   8.2  

>12_01_0808 + 7418878-7420476
          Length = 532

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 11  PQTGSIASTGPSKSSASQNLPRVPRRVP 94
           PQTGS+AS GP+    +  L   P +VP
Sbjct: 265 PQTGSLASQGPTSFLNNPGLCGFPLQVP 292


>01_06_1642 +
           38857326-38857581,38858577-38858818,38859001-38860004,
           38860170-38860587,38860673-38860789
          Length = 678

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 283 YDTLCLEYYKHNSITSAHVPYVYKRNGHIPVSMDEEM*ETYNDNE 149
           +DT+    +  + I S  V     R+GH+ V  D EM +  N NE
Sbjct: 382 FDTVRALVFSRHEIVSVSVKIYDSRSGHLDVVFDSEM-KRVNANE 425


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,220,072
Number of Sequences: 37544
Number of extensions: 234189
Number of successful extensions: 402
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)