Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00098
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31220| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_26128| Best HMM Match : DUF725 (HMM E-Value=7.9)                    28   6.3  
SB_8443| Best HMM Match : Calx-beta (HMM E-Value=0)                    27   8.4  

>SB_31220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 5   YGPQTGSIASTGPSKSSASQ 64
           YGP+  + AS GPS  SASQ
Sbjct: 102 YGPRRSADASAGPSSRSASQ 121


>SB_26128| Best HMM Match : DUF725 (HMM E-Value=7.9)
          Length = 213

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 207 TGISQFLWTKKCKRHTMTMNENSKF*HLFNPL 112
           TG     +   C+ HT  +NENS F   + PL
Sbjct: 109 TGTPSVSFNPSCQLHTYEVNENSDFESSYEPL 140


>SB_8443| Best HMM Match : Calx-beta (HMM E-Value=0)
          Length = 694

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 226 PYVYKRNGHIPVSMDEEM*E 167
           PYV K + H P   DEEM E
Sbjct: 520 PYVVKEDAHFPTDHDEEMDE 539


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,493,838
Number of Sequences: 59808
Number of extensions: 318844
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)