Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00098
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016443-10|AAC24276.4|  325|Caenorhabditis elegans Serpentine r...    27   7.3  
Z81508-4|CAB04139.1|  371|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AF016443-10|AAC24276.4|  325|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 9 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 17/54 (31%), Positives = 32/54 (59%)
 Frame = +2

Query: 143 FSFIVIVCLLHFFVHRNWDMPVSFVNVRNVG*CY*IMFVILKA*RVIYYVASQS 304
           F+ IV VCL    +  N+D+PV++ N+ +V   Y I+   +    ++YY+ ++S
Sbjct: 228 FNTIVNVCL----ILDNYDIPVTYKNIASVCCDYAILLYGIIV-PIVYYIQTES 276


>Z81508-4|CAB04139.1|  371|Caenorhabditis elegans Hypothetical
           protein F20E11.6 protein.
          Length = 371

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = +2

Query: 371 YTSGISSLIVTLYKCIVSAY*NV*SIPLLREVCIKKSTDTSLKVLLPYCHVFVWLLDCF 547
           Y SG   L++T++  I SA      I    EV I+  TD+ L V+L    +F   L CF
Sbjct: 248 YHSGRMILVMTIFYTIASA---PGGIANFIEVYIEIPTDSLLMVILGQGSIFFQALFCF 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,249,623
Number of Sequences: 27780
Number of extensions: 238518
Number of successful extensions: 427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)