Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00098
         (579 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23290.2 68417.m03357 protein kinase family protein contains ...    29   1.7  
At4g23290.1 68417.m03356 protein kinase family protein contains ...    29   1.7  
At1g48500.1 68414.m05421 expressed protein ; expression supporte...    27   9.0  

>At4g23290.2 68417.m03357 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 690

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 412 LIKCNN*TTNTRCIKLIMHLRFRTKQTCYNIAVTY 308
           + +CN   T   C K + HLR   +  C  I V Y
Sbjct: 197 IAQCNKDLTKLNCEKCLQHLRIDNRSCCRGIQVGY 231


>At4g23290.1 68417.m03356 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 600

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 412 LIKCNN*TTNTRCIKLIMHLRFRTKQTCYNIAVTY 308
           + +CN   T   C K + HLR   +  C  I V Y
Sbjct: 107 IAQCNKDLTKLNCEKCLQHLRIDNRSCCRGIQVGY 141


>At1g48500.1 68414.m05421 expressed protein ; expression supported
           by MPSS
          Length = 285

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 190 KLGYARFVCKRKERGLMLL-NYVCNTQGIACHILRSITVS 306
           K   ARF+ KRKER + +   YV N   I C  L S  VS
Sbjct: 238 KASLARFLEKRKERVINVSPYYVDNKSSIDCRTLMSECVS 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,172,337
Number of Sequences: 28952
Number of extensions: 207569
Number of successful extensions: 340
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)