Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00097
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   2.0  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    26   4.5  
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...    26   6.0  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 155 AAAGPLVSREYYRPWVTLLPRLETLA--PASKVTRKVPSKPGRPA 283
           A   P V     RP V ++P   ++   PA+ V  +VPS P RPA
Sbjct: 610 APVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPA 654


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 271 WTSSISPRKKSLLKRRTATSWLKANT 348
           WTSS+  + +S L  +TA  ++++NT
Sbjct: 365 WTSSVFEKPESDLPNKTAFGFMRSNT 390


>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = -2

Query: 316 AVLTEISSGAKCWTSRFTWN-FPCHF*CWSQGLEPRQQGDPRAV 188
           A L  I    K    RF  N FP H   W+ G  P+   DP  V
Sbjct: 65  ATLNPIKQDTKKGKLRFVRNCFPHHGYIWNYGAFPQTYEDPNVV 108


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 307 LKRRTATSWLKANTRRRKISMVTYRVNSLVATLCR 411
           LKR    S+  ANT  RK ++V       +AT C+
Sbjct: 126 LKRPAKVSFALANTPSRKGNLVPQSPRRTIATTCK 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,790
Number of Sequences: 5004
Number of extensions: 57429
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)