Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00097
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 41 8e-04
03_02_0484 + 8805053-8805538 41 0.001
03_02_0483 - 8804021-8804485 41 0.001
03_02_0478 + 8775892-8776377 40 0.003
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 38 0.010
01_01_0229 - 1943473-1943922 37 0.013
01_01_0231 + 1951047-1951499 37 0.018
01_01_0227 + 1933247-1933699 35 0.071
12_02_0136 + 14109557-14109661,14109742-14109804 33 0.29
02_02_0077 - 6586638-6587165 33 0.29
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 32 0.50
05_03_0545 - 15244647-15245147,15245342-15245635 31 0.67
09_04_0300 - 16488358-16488447,16488684-16489116,16489377-164896... 31 0.88
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 31 0.88
02_04_0028 + 19027510-19027983,19028087-19028278,19028369-190285... 30 1.5
09_02_0573 - 10804171-10805096,10805188-10805377,10805920-108063... 30 2.0
07_01_1127 + 10456895-10457388,10457488-10458112 29 3.5
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 29 4.7
09_03_0036 + 11772940-11773171,11774995-11775104 29 4.7
07_03_1444 - 26578007-26578117,26578370-26578474,26578971-265790... 29 4.7
04_01_0252 - 3329712-3331061 29 4.7
03_01_0491 + 3720842-3720958,3721904-3723109 28 6.2
>03_02_0485 - 8808139-8808618
Length = 159
Score = 41.1 bits (92), Expect = 8e-04
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = +3
Query: 273 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 428
DV EE+ V+ DG I+ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 429 SVESRLSSDGVLSVIAPRKVP 491
+++ + +GVL+V P++ P
Sbjct: 128 QIKASM-ENGVLTVTVPKEEP 147
>03_02_0484 + 8805053-8805538
Length = 161
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = +3
Query: 273 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 428
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 429 SVESRLSSDGVLSVIAPRKVP 491
+++ + +GVL+V P++ P
Sbjct: 130 QIKASM-ENGVLTVTVPKEEP 149
>03_02_0483 - 8804021-8804485
Length = 154
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = +3
Query: 273 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 428
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 429 SVESRLSSDGVLSVIAPRKVP 491
+++ + +GVL+V P++ P
Sbjct: 123 QIKASM-ENGVLTVTVPKEEP 142
>03_02_0478 + 8775892-8776377
Length = 161
Score = 39.5 bits (88), Expect = 0.003
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Frame = +3
Query: 273 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 428
DV EE+ V+ DG I+ + G+ EEK DQ + R +F RR+ LP+ E
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 429 SVESRLSSDGVLSVIAPRK 485
+++ + +GVL+V P++
Sbjct: 130 QIKASM-ENGVLTVTVPKE 147
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 37.5 bits (83), Expect = 0.010
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +3
Query: 273 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 428
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 429 SVESRLSSDGVLSVIAPR 482
V++ L +GVL+V P+
Sbjct: 119 QVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 37.1 bits (82), Expect = 0.013
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +3
Query: 273 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 428
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 429 SVESRLSSDGVLSVIAPR 482
V++ + +GVL+V P+
Sbjct: 118 QVKASM-ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 36.7 bits (81), Expect = 0.018
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +3
Query: 273 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 428
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 429 SVESRLSSDGVLSVIAPR 482
V++ + +GVL+V P+
Sbjct: 119 QVKAGM-ENGVLTVTVPK 135
>01_01_0227 + 1933247-1933699
Length = 150
Score = 34.7 bits (76), Expect = 0.071
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +3
Query: 333 VEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLSSDGVLSVIAPRK 485
V+GK++E+ S +F RR+ LP G + V + + +GVL+V P++
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKE 136
>12_02_0136 + 14109557-14109661,14109742-14109804
Length = 55
Score = 32.7 bits (71), Expect = 0.29
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 166 PPCEQRILPPVGHLAAAARD 225
PPC +R+LPP+ HL AR+
Sbjct: 8 PPCRRRLLPPIAHLLPHARE 27
>02_02_0077 - 6586638-6587165
Length = 175
Score = 32.7 bits (71), Expect = 0.29
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Frame = +3
Query: 252 GKFQVNLDVQHFAPEEISVKTADGYIV-VEGKHEEKK---DQHG----YISRQ-----FT 392
G + +D+ AP ++ V+ DG ++ + G+ D G Y+ + F
Sbjct: 60 GALVLAVDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFM 119
Query: 393 RRYALPEGCTAESVESRLSSDGVLSVIAPRKVPP 494
RR+ LPE + V + DGVL+V +K PP
Sbjct: 120 RRFPLPESADLDGVRAEYK-DGVLTVTVDKKPPP 152
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 31.9 bits (69), Expect = 0.50
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Frame = +3
Query: 261 QVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQ------HGYISRQ----FTRRYALP 410
++ D+ + EE+ V D +V+ G+H++++ + G+ + + R ALP
Sbjct: 145 RMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALP 204
Query: 411 EGCTAESVESRLSSDGVLSVIAPR 482
+ C V + L +GVL V P+
Sbjct: 205 DECDKSKVRAEL-KNGVLLVTVPK 227
>05_03_0545 - 15244647-15245147,15245342-15245635
Length = 264
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 348 RVCLQPRCSRPPF*QRFLPGRNAGR 274
R CLQPR SRPP ++F GR+ R
Sbjct: 221 RDCLQPRQSRPPHYRQFTRGRHPNR 245
>09_04_0300 -
16488358-16488447,16488684-16489116,16489377-16489642,
16490015-16490044,16490282-16490606,16491752-16492035,
16492154-16492376,16493117-16493173,16494454-16494947
Length = 733
Score = 31.1 bits (67), Expect = 0.88
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 247 HF*CWSQGLEPRQQGDPRAVVFSAHKGAGCSTEK--IFRSQPQAEMLI 110
H+ WS LE + P +FS + G G TE+ +++ PQAE I
Sbjct: 549 HYKYWSNPLETKLPNAPEMEIFSMY-GVGIPTERAYVYKLAPQAECYI 595
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 31.1 bits (67), Expect = 0.88
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Frame = -3
Query: 573 SPLDWSFTSL-RTGPVWAIGILRHPPLLAAPSWVRLQTTHHLKTA------GTPQIQPYS 415
SPL S T++ RT PV +HP + P L L TA GTP +QP+
Sbjct: 276 SPLTSSQTTMARTNPVAPTAPPQHPRITQQPHSAPLLQPFPLPTASPSPPYGTPLLQPFP 335
Query: 414 PP 409
PP
Sbjct: 336 PP 337
>02_04_0028 +
19027510-19027983,19028087-19028278,19028369-19028545,
19029568-19029663,19030487-19030618,19030950-19031008,
19031234-19031321,19031433-19031693
Length = 492
Score = 30.3 bits (65), Expect = 1.5
Identities = 29/78 (37%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = -3
Query: 351 PRVCLQPRCSRPPF*QRFLPGRNAGR-PGLLGTFLVTFDAGAKVSSRG-SKVTHGR*YSL 178
PR L PR RPP PG GR G T + A A V +G KV G
Sbjct: 98 PRPPLPPRPPRPPLPPLREPGEGGGRGDGRGATGTGSSSAAAAVDRKGKKKVDEG----- 152
Query: 177 LTRGPAAALRKSSGVSPK 124
R P ALRKS + K
Sbjct: 153 -DRDPEQALRKSGPLEGK 169
>09_02_0573 -
10804171-10805096,10805188-10805377,10805920-10806363,
10806689-10807552,10809269-10809802
Length = 985
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/74 (31%), Positives = 32/74 (43%)
Frame = +2
Query: 95 PRRLMDQHFGLGLTPEDFLSAAAGPLVSREYYRPWVTLLPRLETLAPASKVTRKVPSKPG 274
P L D FGL + + F+S A +R + P + L R E S + K KP
Sbjct: 652 PVLLPDLMFGLDRSLQLFVSKAKSGCGTRNSFMPQLPPLTRCEV---GSNILFKKKEKPQ 708
Query: 275 RPAFRPGRNLC*NG 316
P +R +N NG
Sbjct: 709 NPQYRGSQNGTTNG 722
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 348 RVCLQPRCSRPPF*QRFLPGRNAGR 274
R CLQPR SRPP ++F R+ R
Sbjct: 329 RDCLQPRQSRPPHYRQFTRSRHPNR 353
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 295 KKSLLKRRTATSWLKANTRRRKISMVTYRVNS 390
KKS T TS K TRRRK+++V Y S
Sbjct: 16 KKSAAGELTTTSEKKKKTRRRKVAVVYYLCRS 47
>09_03_0036 + 11772940-11773171,11774995-11775104
Length = 113
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 293 GRNLC*NGGRLHRG*RQTRGEERSAWLH 376
G+NL G+ H G R+ RG+ER LH
Sbjct: 21 GQNLMDRRGKRHEGRRERRGKERGRNLH 48
>07_03_1444 -
26578007-26578117,26578370-26578474,26578971-26579030,
26579122-26579233,26579390-26579716,26579814-26579860
Length = 253
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 496 QWRVTQDSDRPNRTRAQGGEGPIQRRQGLSRQQCQHKCSILITYI 630
QWR S R +QGG G + +GL R +C+ L++++
Sbjct: 31 QWRGVFRSVRMESGSSQGGRGALIVLEGLDRSGKSSQCARLLSFL 75
>04_01_0252 - 3329712-3331061
Length = 449
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 348 RVCLQPRCSRPPF*QRFLPGRNAGR 274
R CLQPR +RPP ++F R++ R
Sbjct: 406 RDCLQPRQNRPPHYRQFTRSRHSNR 430
>03_01_0491 + 3720842-3720958,3721904-3723109
Length = 440
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 178 AHKGAGCSTEKIFRSQPQAEMLIHEATRTLNFV 80
A G GC K+F S+ +A+ H A +L F+
Sbjct: 391 ADHGRGCKLAKVFESKDEAKASTHTAISSLPFM 423
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,656,845
Number of Sequences: 37544
Number of extensions: 499926
Number of successful extensions: 1476
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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