Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00097
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 70 2e-12
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 69 3e-12
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 64 1e-10
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 64 1e-10
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 62 4e-10
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 4e-10
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 61 7e-10
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 61 1e-09
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 41 8e-04
SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06) 32 0.39
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 31 0.68
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 3.6
SB_18926| Best HMM Match : Colipase_C (HMM E-Value=0.0043) 29 4.8
SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10) 28 6.3
SB_35198| Best HMM Match : rve (HMM E-Value=8.1e-20) 28 8.4
SB_28182| Best HMM Match : RnaseH (HMM E-Value=1.8) 28 8.4
SB_26250| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 70.1 bits (164), Expect = 2e-12
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 KFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAES 431
KFQ+ LDV+ F PEEI+ K +G I V G + ++ G+ S++F R Y LPEG S
Sbjct: 5 KFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEE-GFDSKEFRRCYNLPEGVDESS 63
Query: 432 VESRLSSDGVLSVIAPRKVPPA 497
+ +R++ DG+L V A +K PPA
Sbjct: 64 ISTRIAEDGMLHVEALKKSPPA 85
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +3
Query: 255 KFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYIS-RQFTRRYALPEGCTAES 431
KF + LDV F PEE+ VK + V + E ++HG+ + RQF R + LP ++
Sbjct: 99 KFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPREVDMDT 156
Query: 432 VESRLSSDGVLSVIAPRK 485
+ RL DGVL + A ++
Sbjct: 157 LVPRLGKDGVLYIEADKR 174
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 69.3 bits (162), Expect = 3e-12
Identities = 32/78 (41%), Positives = 50/78 (64%)
Frame = +3
Query: 270 LDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLS 449
LDV+++ PEEIS+K G I ++GKH+ + +HGY + +F R Y LP+G +V SR++
Sbjct: 45 LDVKNYRPEEISLKVEHGRIKIDGKHKSE-GEHGYETSEFHRSYNLPDGVDVSTVSSRIT 103
Query: 450 SDGVLSVIAPRKVPPAVE 503
DG+L + A + P E
Sbjct: 104 GDGLLHIEALKAEPQETE 121
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/82 (36%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +3
Query: 249 QGKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTA 425
+ K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R +ALPEG A
Sbjct: 4 ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEA 62
Query: 426 ESVESRLSSDGVLSVIAPRKVP 491
+V++R+S+ G L + A + +P
Sbjct: 63 SNVKTRISNHGQLHIEAMKALP 84
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/89 (29%), Positives = 45/89 (50%)
Frame = +3
Query: 234 QHQK*QGKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 413
+ K KF + +DV F P+ I V+ ++V HE + + H Y + F R++ LP
Sbjct: 91 EESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPR 149
Query: 414 GCTAESVESRLSSDGVLSVIAPRKVPPAV 500
+S+ +RL +G L A ++ PA+
Sbjct: 150 EVDMDSLTTRLDKEGKLHFEAKKRNAPAL 178
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/82 (36%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +3
Query: 249 QGKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTA 425
+ K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R +ALPEG A
Sbjct: 4 ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEA 62
Query: 426 ESVESRLSSDGVLSVIAPRKVP 491
+V++R+S+ G L + A + +P
Sbjct: 63 SNVKTRISNHGQLHIEAMKALP 84
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/89 (29%), Positives = 45/89 (50%)
Frame = +3
Query: 234 QHQK*QGKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 413
+ K KF + +DV F P+ I V+ ++V HE + + H Y + F R++ LP
Sbjct: 91 EESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPR 149
Query: 414 GCTAESVESRLSSDGVLSVIAPRKVPPAV 500
+S+ +RL +G L A ++ PA+
Sbjct: 150 EVDMDSLTTRLDKEGKLHFEAKKRNAPAL 178
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/82 (35%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +3
Query: 249 QGKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTA 425
+ K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R + LPEG A
Sbjct: 4 ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEA 62
Query: 426 ESVESRLSSDGVLSVIAPRKVP 491
+V++R+S+ G L + A + +P
Sbjct: 63 SNVKTRISNHGQLHIEAMKALP 84
Score = 61.7 bits (143), Expect = 6e-10
Identities = 28/74 (37%), Positives = 48/74 (64%)
Frame = +3
Query: 270 LDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLS 449
LDV+ + PEEIS K +G++ V+G+H + G+ ++F R + LPEG A +V++R+S
Sbjct: 246 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 304
Query: 450 SDGVLSVIAPRKVP 491
+ G L + A + +P
Sbjct: 305 NHGQLHIEAMKALP 318
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/89 (29%), Positives = 45/89 (50%)
Frame = +3
Query: 234 QHQK*QGKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 413
+ K KF + +DV F P+ I V+ ++V HE + + H Y + F R++ LP
Sbjct: 91 EESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPR 149
Query: 414 GCTAESVESRLSSDGVLSVIAPRKVPPAV 500
+S+ +RL +G L A ++ PA+
Sbjct: 150 EVDMDSLTTRLDKEGKLHFEAKKRNAPAL 178
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/89 (29%), Positives = 45/89 (50%)
Frame = +3
Query: 234 QHQK*QGKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 413
+ K KF + +DV F P+ I V+ ++V HE + + H Y + F R++ LP
Sbjct: 325 EESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPR 383
Query: 414 GCTAESVESRLSSDGVLSVIAPRKVPPAV 500
+S+ +RL +G L A ++ PA+
Sbjct: 384 EVDMDSLTTRLDKEGKLHFEAKKRNAPAL 412
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/82 (35%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +3
Query: 249 QGKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTA 425
+ K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R + LPEG A
Sbjct: 4 ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEA 62
Query: 426 ESVESRLSSDGVLSVIAPRKVP 491
+V++R+S+ G L + A + +P
Sbjct: 63 SNVKTRISNHGQLHIEAMKALP 84
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/89 (29%), Positives = 45/89 (50%)
Frame = +3
Query: 234 QHQK*QGKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 413
+ K KF + +DV F P+ I V+ ++V HE + + H Y + F R++ LP
Sbjct: 91 EESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPR 149
Query: 414 GCTAESVESRLSSDGVLSVIAPRKVPPAV 500
+S+ +RL +G L A ++ PA+
Sbjct: 150 EVDMDSLTTRLDKEGKLHFEAKKRNAPAL 178
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 61.3 bits (142), Expect = 7e-10
Identities = 29/74 (39%), Positives = 47/74 (63%)
Frame = +3
Query: 270 LDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLS 449
LDV+ + PEEIS K +G + V+G+H + + G+ ++F R + LPEG E+V SR+S
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRIS 70
Query: 450 SDGVLSVIAPRKVP 491
+ G L + A + +P
Sbjct: 71 NHGHLHIEARKALP 84
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/84 (32%), Positives = 44/84 (52%)
Frame = +3
Query: 249 QGKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAE 428
+ KF + +DV F PE I V+ ++V HE + + H Y + F R++ LP +
Sbjct: 95 EDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREVDMD 153
Query: 429 SVESRLSSDGVLSVIAPRKVPPAV 500
S+ +RL +G L A + V PA+
Sbjct: 154 SLTTRLDKEGKLHFEAKKSVAPAL 177
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 60.9 bits (141), Expect = 1e-09
Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Frame = +3
Query: 249 QGKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTA 425
+ K ++ LDV+ + PEEIS K +G + V+G+H + G+ ++F R + LPEG A
Sbjct: 5 ENKLEIAKLDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEA 63
Query: 426 ESVESRLSSDGVLSVIAPRKVPPAVEGDARFRSPKPD 536
+V++R+S+ G L + A + +P E D + K D
Sbjct: 64 SNVKTRISNHGQLHIEAMKALP---EPDGAKKESKDD 97
Score = 51.2 bits (117), Expect = 8e-07
Identities = 26/82 (31%), Positives = 44/82 (53%)
Frame = +3
Query: 255 KFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESV 434
KF + +DV+ F PE I V+ ++V HE + + H Y + F R++ LP +S+
Sbjct: 98 KFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFILPREVDMDSL 156
Query: 435 ESRLSSDGVLSVIAPRKVPPAV 500
+RL +G L A ++ PA+
Sbjct: 157 TTRLDKEGKLHFEAKKRNAPAL 178
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 41.1 bits (92), Expect = 8e-04
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 255 KFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYI-SRQFTRRYALPE 413
KF + LDV F PEE+ VK + V + E ++HG+ +RQF R + LP+
Sbjct: 27 KFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPQ 78
>SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06)
Length = 237
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/76 (22%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +3
Query: 261 QVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYIS-RQFTRRYALPEGCTAESVE 437
++ ++V+ FA +++S++ ++++G+ +K D G+ RQF R P+ +S++
Sbjct: 101 KLEMNVRGFAAKDVSLQVDGQDLIIKGEKMDKDD--GWCKMRQFCWRRRFPKSTDMKSIK 158
Query: 438 SRLSSDGVLSVIAPRK 485
+ L +L + A ++
Sbjct: 159 ATLKYGDILEIEAQKE 174
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 31.5 bits (68), Expect = 0.68
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 342 KHEEKKDQHGYISRQFTRRYAL 407
KHEE++D+HGY+ + T ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 306 VKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 413
+++A GY+V G H K + G + + R LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 457 VCCL*SHPGRCRQQWRVTQDSDRPNR--TRAQGGEGPIQRRQGLSRQQCQHKC 609
VC L PGRCR + + + R R T GG G R SR+QCQ +C
Sbjct: 2121 VCSLPLRPGRCRARMVMWFYNKRTGRCQTFNYGGCGGNGNR-FRSRRQCQRRC 2172
>SB_18926| Best HMM Match : Colipase_C (HMM E-Value=0.0043)
Length = 811
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 414 GCTAESVESRLSSDGVLSVIAPRKVPPAVEGD 509
G + +S+ES++ SDG ++P K PA D
Sbjct: 531 GSSPQSLESQVLSDGCTKTMSPNKTSPAAVRD 562
>SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10)
Length = 841
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = -3
Query: 294 PGRNAGRPGLLGTFLVTFDAGAKVSSRGSKVTHGR*YS 181
PG NA LL F+ G+ VSSR S V+HG YS
Sbjct: 505 PGYNANGDRLLSGVGSVFNVGS-VSSRTSYVSHGSNYS 541
>SB_35198| Best HMM Match : rve (HMM E-Value=8.1e-20)
Length = 745
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Frame = +1
Query: 400 TLCRRAVRLNLWSPGCLQMVC--------CL*SHPGRCRQQWRVTQDSDRP 528
T CR RL++W PG + + CL + P + ++ R T DRP
Sbjct: 432 TKCRERARLSVWWPGLSRSIAQKVASCEFCLVNQPTQRKEPLRTTPLPDRP 482
>SB_28182| Best HMM Match : RnaseH (HMM E-Value=1.8)
Length = 507
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Frame = +1
Query: 400 TLCRRAVRLNLWSPGCLQMVC--------CL*SHPGRCRQQWRVTQDSDRP 528
T CR RL++W PG + + CL + P + ++ R T DRP
Sbjct: 432 TKCRERARLSVWWPGLSRSIAQKVASCEFCLVNQPTQRKEPLRTTPLPDRP 482
>SB_26250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = -1
Query: 488 HLPGCDYRQHTI*RQPGLHRFSRTALRQSVATSELTRYVTMLIFLLLVFAFN 333
H YR H + R+P H +R + + + +T L++ ++AFN
Sbjct: 204 HFERVPYRNHQVLREPARH-VTRFIALSYIGNPQKKKILTELLYFQYMYAFN 254
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,580,064
Number of Sequences: 59808
Number of extensions: 515945
Number of successful extensions: 1461
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1453
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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