Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00096
(386 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal prote... 74 3e-14
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 29 1.5
AC024776-7|AAK68469.1| 411|Caenorhabditis elegans Nuclear pore ... 29 1.5
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ... 29 1.5
AF016449-12|AAG24004.2| 365|Caenorhabditis elegans Serpentine r... 28 2.0
Z81509-4|CAB04152.2| 236|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical p... 28 2.6
AF016428-2|AAO26002.1| 316|Caenorhabditis elegans Serpentine re... 27 3.5
Z66516-9|CAN99713.1| 455|Caenorhabditis elegans Hypothetical pr... 27 4.6
Z66516-8|CAB60308.2| 459|Caenorhabditis elegans Hypothetical pr... 27 4.6
Z50015-2|CAN99700.1| 455|Caenorhabditis elegans Hypothetical pr... 27 4.6
Z50015-1|CAB60292.2| 459|Caenorhabditis elegans Hypothetical pr... 27 4.6
U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical p... 27 4.6
L39212-1|AAC37255.1| 459|Caenorhabditis elegans transcription f... 27 4.6
AL021172-3|CAN99704.1| 455|Caenorhabditis elegans Hypothetical ... 27 4.6
AL021172-2|CAB60307.2| 459|Caenorhabditis elegans Hypothetical ... 27 4.6
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 27 6.1
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 27 6.1
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 27 6.1
U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical pr... 26 8.1
AL033514-35|CAE18033.1| 106|Caenorhabditis elegans Hypothetical... 26 8.1
>U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 25 protein.
Length = 117
Score = 74.1 bits (174), Expect = 3e-14
Identities = 37/51 (72%), Positives = 41/51 (80%)
Frame = +2
Query: 113 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELGKK 265
LNN VLFD+ TY+KLYKEV YKLITP+VVSERLKVR SLA+ L EL K
Sbjct: 40 LNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAK 90
Score = 42.7 bits (96), Expect = 9e-05
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +1
Query: 262 KGLIKQVVQHHGQVIYTRATKGDDPV 339
KGL+K VV HHGQV+YTRATK D +
Sbjct: 90 KGLVKCVVHHHGQVVYTRATKEADVI 115
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 6 RRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEK 101
RR P+ K RR+ AA PRRR P+ +
Sbjct: 466 RRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRR 497
>AC024776-7|AAK68469.1| 411|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform a protein.
Length = 411
Score = 28.7 bits (61), Expect = 1.5
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = -3
Query: 342 CDWIIALGRTRVDHLPMML-DYLFDETFFPS--SMSALLAREPRTFNLSDTTAGVISLYC 172
C +++ +++ H +L + DET F S S+ AL A + NL TTA + LY
Sbjct: 283 CAKFLSVPISKIAHEAHILTQFGHDETSFHSITSIKALEASQSAALNLVATTAKGVRLYF 342
Query: 171 GTSLYSFSYVGLSNNT 124
S S + + NN+
Sbjct: 343 SVSTGPQSTMAMFNNS 358
>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform b protein.
Length = 1090
Score = 28.7 bits (61), Expect = 1.5
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = -3
Query: 342 CDWIIALGRTRVDHLPMML-DYLFDETFFPS--SMSALLAREPRTFNLSDTTAGVISLYC 172
C +++ +++ H +L + DET F S S+ AL A + NL TTA + LY
Sbjct: 198 CAKFLSVPISKIAHEAHILTQFGHDETSFHSITSIKALEASQSAALNLVATTAKGVRLYF 257
Query: 171 GTSLYSFSYVGLSNNT 124
S S + + NN+
Sbjct: 258 SVSTGPQSTMAMFNNS 273
>AF016449-12|AAG24004.2| 365|Caenorhabditis elegans Serpentine
receptor, class t protein71 protein.
Length = 365
Score = 28.3 bits (60), Expect = 2.0
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Frame = -3
Query: 261 FPSSMSALLAREPRTFNLS-DTTAGVISLYCGTSLYSF-SY-----VGLSNNTWLFNLSR 103
FP M LL +P + DT ++ + C ++LY + SY G S ++WL+ R
Sbjct: 136 FPLEMLFLLNFQPELYECQPDTINNIVLVLCTSTLYCYISYHLLFNFGYSTSSWLYKSKR 195
>Z81509-4|CAB04152.2| 236|Caenorhabditis elegans Hypothetical
protein F21A3.6 protein.
Length = 236
Score = 27.9 bits (59), Expect = 2.6
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +2
Query: 146 YEKLYKEVPQYKLITP---AVVSERLKVRGSLARRA---LIELGKKVSSNR*SNIMGR*S 307
+ +L+ E P+YKLI P A+ L L R A L LGK + S R +G+
Sbjct: 112 FVRLFSEYPRYKLIWPQFRAIPDSSLMNAVELRRHASVYLNGLGKIIDSMRDEEALGKSM 171
Query: 308 TRV 316
+R+
Sbjct: 172 SRI 174
>Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical
protein C53A5.13 protein.
Length = 681
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 4 REGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 99
REG G + + RIRW+ +EE+V R+
Sbjct: 27 REGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58
>AF016428-2|AAO26002.1| 316|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 65 protein.
Length = 316
Score = 27.5 bits (58), Expect = 3.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 252 SMSALLAREPRTFNLSDTTAGVISLYCG 169
S++ ++ E F+LSDT ++ L+CG
Sbjct: 2 SVNRTISLENGKFDLSDTIVNIVELFCG 29
>Z66516-9|CAN99713.1| 455|Caenorhabditis elegans Hypothetical
protein W03C9.4b protein.
Length = 455
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 116 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELGKKVSSN 277
NN+ L + PT K + P + +ITP +R S A + G V S+
Sbjct: 368 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSS 421
>Z66516-8|CAB60308.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 116 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELGKKVSSN 277
NN+ L + PT K + P + +ITP +R S A + G V S+
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSS 425
>Z50015-2|CAN99700.1| 455|Caenorhabditis elegans Hypothetical
protein W03C9.4b protein.
Length = 455
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 116 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELGKKVSSN 277
NN+ L + PT K + P + +ITP +R S A + G V S+
Sbjct: 368 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSS 421
>Z50015-1|CAB60292.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 116 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELGKKVSSN 277
NN+ L + PT K + P + +ITP +R S A + G V S+
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSS 425
>U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical
protein C05D11.1 protein.
Length = 995
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 119 NQVLFDKPTYEKLYKEVPQYKLITPAVVSERL-KVRGSL 232
N +LFD+ EKL++++ + + P V E+L +VR +L
Sbjct: 694 NCILFDELVLEKLHEKISKDVMKNPEAVLEKLEQVRSAL 732
>L39212-1|AAC37255.1| 459|Caenorhabditis elegans transcription
factor protein.
Length = 459
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 116 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELGKKVSSN 277
NN+ L + PT K + P + +ITP +R S A + G V S+
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSS 425
>AL021172-3|CAN99704.1| 455|Caenorhabditis elegans Hypothetical
protein W03C9.4b protein.
Length = 455
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 116 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELGKKVSSN 277
NN+ L + PT K + P + +ITP +R S A + G V S+
Sbjct: 368 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSS 421
>AL021172-2|CAB60307.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 116 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELGKKVSSN 277
NN+ L + PT K + P + +ITP +R S A + G V S+
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSS 425
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 39 RRRRKDPVAAKPRRRSGP 92
RRR+ P+ A PRRR P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 39 RRRRKDPVAAKPRRRSGP 92
RRR+ P+ A PRRR P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Frame = -1
Query: 170 GLPCTVSHMWV-YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 51
GL + W YQ CS TC F W W CR R++
Sbjct: 353 GLSNQYTDEWYEYQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397
>U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical
protein C06E7.4 protein.
Length = 500
Score = 26.2 bits (55), Expect = 8.1
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = -3
Query: 240 LLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPP 61
++ R+P ++ ++ + C S FS+V + R L F+F PP
Sbjct: 340 IIRRQP-SYGSRSSSIATSQMRCDQSEIDFSWVNEEEDKLKRESKRIDSLPEFYFGMDPP 398
Query: 60 PDPS 49
P PS
Sbjct: 399 PVPS 402
>AL033514-35|CAE18033.1| 106|Caenorhabditis elegans Hypothetical
protein Y75B8A.37 protein.
Length = 106
Score = 26.2 bits (55), Expect = 8.1
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1
Query: 41 SVFFEAVWPKPSR 3
S+FF A+WPKP R
Sbjct: 71 SLFFVAIWPKPVR 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,893,830
Number of Sequences: 27780
Number of extensions: 188236
Number of successful extensions: 613
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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