Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00096
         (386 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34555.1 68417.m04910 40S ribosomal protein S25, putative           69   8e-13
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo...    68   2e-12
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)            68   3e-12
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)            66   6e-12
At5g64950.1 68418.m08170 mitochondrial transcription termination...    30   0.47 
At1g14500.1 68414.m01719 ankyrin repeat family protein contains ...    29   1.4  
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri...    28   2.5  
At3g60980.1 68416.m06824 pentatricopeptide (PPR) repeat-containi...    27   3.3  
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim...    27   5.8  
At1g24706.1 68414.m03104 expressed protein                             27   5.8  
At1g48180.1 68414.m05378 expressed protein ; expression supporte...    26   7.6  

>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
          Length = 108

 Score = 69.3 bits (162), Expect = 8e-13
 Identities = 30/51 (58%), Positives = 42/51 (82%)
 Frame = +2

Query: 113 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELGKK 265
           +NN VLFD+ TY+KL  E P++KLITP+++S+RL++ GSLARRA+ EL  K
Sbjct: 37  VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAK 87



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 262 KGLIKQVVQHHGQVIYTRATKG 327
           KG I+ V  H  Q IYTRAT G
Sbjct: 87  KGTIRMVSAHSSQQIYTRATHG 108


>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
           ribosomal protein S25, Lycopersicon esculentum,
           PIR2:S40089
          Length = 108

 Score = 68.1 bits (159), Expect = 2e-12
 Identities = 29/51 (56%), Positives = 42/51 (82%)
 Frame = +2

Query: 113 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELGKK 265
           +NN VLFD+ TY+KL  E P++KLITP+++S+R+++ GSLARRA+ EL  K
Sbjct: 37  VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAK 87



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 262 KGLIKQVVQHHGQVIYTRAT 321
           KG+I+ V  H  Q IYTRAT
Sbjct: 87  KGVIRMVAAHSSQQIYTRAT 106


>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
          Length = 108

 Score = 67.7 bits (158), Expect = 3e-12
 Identities = 29/51 (56%), Positives = 42/51 (82%)
 Frame = +2

Query: 113 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELGKK 265
           +NN VLFD+ TY+KL  E P++KLITP+++S+R+++ GSLARRA+ EL  K
Sbjct: 37  VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAK 87



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +1

Query: 262 KGLIKQVVQHHGQVIYTRAT 321
           KGLI+ V  H  Q IYTRAT
Sbjct: 87  KGLIRMVSAHSSQQIYTRAT 106


>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 
          Length = 125

 Score = 66.5 bits (155), Expect = 6e-12
 Identities = 27/48 (56%), Positives = 41/48 (85%)
 Frame = +2

Query: 113 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIEL 256
           +NN VLFD+ TY+KL  E P++KLITP+++S+RL++ GSLAR+A+ +L
Sbjct: 53  VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDL 100


>At5g64950.1 68418.m08170 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 391

 Score = 30.3 bits (65), Expect = 0.47
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -3

Query: 348 SLCDWIIALGRTRVDHLPMMLDYLFDETFFPSSMSALLAREPRTFNLSD 202
           S C W++      +  LP  + YL       S +++LL R+PR FNLS+
Sbjct: 166 SRCGWLLLSRDPNLFLLPN-ISYLETCGIVGSQLASLLRRQPRIFNLSE 213


>At1g14500.1 68414.m01719 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 436

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 177 YCGTSLYSFSYVGLSN--NTWLFNLSRTFPLDHFFFLALPPPDPSFFFC 37
           +C   LY+F  + + +   TW F +  +  + +   +A+  P+P  F C
Sbjct: 342 FCCALLYTFCLLPIGSLFTTWFFWIGASLGVSYALAMAIISPNPLLFLC 390


>At2g17250.1 68415.m01992 expressed protein weak similarity to
           Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
           [Saccharomyces cerevisiae]
          Length = 577

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/47 (27%), Positives = 29/47 (61%)
 Frame = +2

Query: 116 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIEL 256
           +++ + +KPT +K   E     L++PA +S+R+K++ + A  + + L
Sbjct: 245 SDESISEKPTDKKKKTEKGDSTLLSPATISKRMKLKFTKAWISFLRL 291


>At3g60980.1 68416.m06824 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 412

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -3

Query: 357 LYHSLCDWI-IALGRTRVDHLPMMLDYLFDETFFPSSMSALLAREPRTFNLSDTTAGVIS 181
           LYH L D      G    D + +M+D  FD  +F  +M       P+   LSD    +I+
Sbjct: 289 LYHELLDKNGTGKGCLDSDTIKIMVDECFDMGWFSEAMETYKKARPKNDYLSDKY--IIT 346

Query: 180 LYCGTSLYS 154
            +C   + S
Sbjct: 347 RFCENRMLS 355


>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 595

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 151 LICGFIKQHLVVQLVTNFSFGPLLLLGFAAT 59
           ++CG + +H V++L   F+ G L  +GF  T
Sbjct: 213 MLCGLLMRHEVLRLGAVFASGLLRAIGFLQT 243


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 114  NLSRTFPLDHFFFLALPPPDP 52
            +L ++ P DHF    LPPP P
Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582


>At1g48180.1 68414.m05378 expressed protein ; expression supported
           by MPSS
          Length = 239

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 210 LSDTTAGVISLYCGTSLYSFSYVGL 136
           L    + +  +YCGTS    SYVGL
Sbjct: 149 LQQDASAITGIYCGTSGEPASYVGL 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,420,553
Number of Sequences: 28952
Number of extensions: 173107
Number of successful extensions: 533
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)