Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00094
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          28   6.3  

>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
 Frame = -1

Query: 483  TYHISYYIIINYCFFTYCLLT*QVQHTPREPFSYGYAIINHICIFLWVP*SFFYLQGTLT 304
            T+H  + II ++ FF+  ++T     +      Y ++II H   F+ +  +  Y+   +T
Sbjct: 1033 THHYFFVIITHHYFFS--IITHHFFFSIITDH-YFFSIITHHYFFVII--THHYIFPIIT 1087

Query: 303  ENKF---VQKHYQFSMITFIHFVI 241
             + F   +  HY FS+IT+ +F +
Sbjct: 1088 HHDFFSIITHHYFFSIITYHYFFV 1111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,098,803
Number of Sequences: 59808
Number of extensions: 255525
Number of successful extensions: 464
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)