Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00094
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   3.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   6.7  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              21   8.8  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -3

Query: 385 LWICYNKSHLYISMGTLIF---FLFTRDTYRKQICT 287
           LW+ ++K+ LY+S  TL+      F    +  QIC+
Sbjct: 112 LWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQICS 147


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 5/10 (50%), Positives = 10/10 (100%)
 Frame = +3

Query: 465 NMRCDKCNSF 494
           N++CDKC+++
Sbjct: 147 NLKCDKCSTY 156


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 128 KPAEFDHVLM*PFNISR 178
           K  EFDH    PF++ R
Sbjct: 61  KSGEFDHTKNYPFDVDR 77


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 7   ELHQSSSRVDSVTKLKTSFFF 69
           E+  S S VDS  K + SF F
Sbjct: 108 EMIDSCSNVDSSDKCEKSFMF 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,772
Number of Sequences: 438
Number of extensions: 2663
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)