Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00093
         (629 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4MJZ9 Cluster: DNA mismatch repair protein MutS domain...    32   9.9  

>UniRef50_A4MJZ9 Cluster: DNA mismatch repair protein MutS domain
           protein; n=1; Petrotoga mobilis SJ95|Rep: DNA mismatch
           repair protein MutS domain protein - Petrotoga mobilis
           SJ95
          Length = 447

 Score = 32.3 bits (70), Expect = 9.9
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -1

Query: 623 GKITIKYIFYLTSDFYGI*IIKLHLKNV*IKNIKKF 516
           G++ +K +  + ++++ I ++  H  NV  KNIKKF
Sbjct: 347 GRLIVKAVIKILNNYHSISVVTTHFNNVAEKNIKKF 382


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 505,573,923
Number of Sequences: 1657284
Number of extensions: 8564504
Number of successful extensions: 13157
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 12597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13133
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)