Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00093
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132853-2|CAB60441.2|  424|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AL132853-2|CAB60441.2|  424|Caenorhabditis elegans Hypothetical
           protein Y80D3A.4 protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 127 HDYYLNIRSKNRRYVMKIQIVRRARSTTTSASYLRLRLR 11
           HDYY+N++   R  V   QI+R  R        +R +L+
Sbjct: 365 HDYYVNVKETPRYSVRLAQILRIIRKIKEEVLQIRSKLQ 403


>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical protein
            R09E10.7 protein.
          Length = 1717

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 287  LYSTNICKTKHSL*KNLILKTYKCSELCNFVSSYLVDTKLFLLYSNSLKKAIF*LTK 457
            L+   I + K  L   L+++     E C  V   ++D KL  +Y N L  A + L +
Sbjct: 961  LHWETIRREKSELTSMLLVRYKDSQEKCALVIDRILDPKLHRMYQNHLSNAAYFLER 1017


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,450,462
Number of Sequences: 27780
Number of extensions: 233072
Number of successful extensions: 371
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)