Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00093
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   4.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.7  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   7.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.9  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 279 LYNYIVLIYAKQNIRYRRIS 338
           L NY + +Y    +R+RR +
Sbjct: 18  LINYFIFLYFNSLVRFRRFT 37


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 5   LSPQSKTKVAGGCGR*PRTTHYLYFHYIASIFRPYI 112
           L+P  +   +GG    PR +H  Y H  +  ++P I
Sbjct: 141 LTPSPQMYSSGGEEITPRQSHQSYHHMDSVEYKPEI 176


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 31 SWRMWSLTSHDA 66
          +W  W+ TSH+A
Sbjct: 28 AWWFWTATSHEA 39


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 457 IAH*GFCYICICICV*RHVGNFLI 528
           ++H  +  + +   + RH+GNFLI
Sbjct: 195 LSHAEYSMLLVYFHLQRHMGNFLI 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,243
Number of Sequences: 438
Number of extensions: 2989
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)