Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00091
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase |Schizos...    29   0.81 
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    29   0.81 
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.3  
SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|...    26   5.7  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   9.9  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   9.9  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    25   9.9  

>SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 404 LLSDIYTLKPGVEKMFCSVFQYSSTRFFMTIPIASNIPKNTNNSST 267
           ++S     + GVEK++C      S  FF+ IP+   I + T +  T
Sbjct: 180 VISSFVVEENGVEKLYCIGSSIYSKSFFVLIPVIPGIFRGTGDLFT 225


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 157 HELLVPN*SKNLVRVTYSDSGTRVFLKRF--TPFCWRYRRVRESSPVKFK 14
           HE++ P  SK +   T+  +G+R +      T  CW    +  ++P  FK
Sbjct: 81  HEIMFPGHSKIVTTTTFDKNGSRFYTGSLDNTIHCWDLNGLSATNPHPFK 130


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 107  VSDPYEIFRLIWDQEFMEFIVQETNRYAQQLAAEMLD 217
            V + YE+  L +   F+EF   +T+ YA++L  E+L+
Sbjct: 1041 VQEFYEVVPLAFINCFLEFTSSKTSFYAKKLFLEVLN 1077


>SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 177

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -2

Query: 665 LTYFVSFYAHCCSFVWNKLVDVQPTFPLQQRFI*SNVLLHYI*FRELGIQMAITGS 498
           +T+F S   H  +  W KL D   TF   ++    NV      F ++ + M + GS
Sbjct: 53  VTFFGSVTEHVSNSWWIKLYDYMMTFISGEKLCMQNVAYE---FEDISLCMDVVGS 105


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 25/75 (33%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
 Frame = -2

Query: 491 KSFACEGSRLRFLKFSELL---KCKHLLSNWNLLSDIYTLKPGVEKMFCSVFQYSSTRFF 321
           K+ AC    +RF KFS LL   K      N  L      L  G E  F    + +  R  
Sbjct: 37  KTLACSPFHVRFGKFSLLLPSDKKVEFSVNGQLTGFNMKLGDGGEAFFVFATENAVPREL 96

Query: 320 MTIPIAS--NIPKNT 282
            T PI S    PK T
Sbjct: 97  QTSPIVSPTTSPKQT 111


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -3

Query: 379 NLEWRRCFVPYSSTLQPGSL*RFPSPVIFRRTPITRLHWFLSFCNPT 239
           ++ W     P+ + L    L + P  +  RRTP+  L+W  +    T
Sbjct: 329 SVRWYVLQNPFPNKLNLNMLLKIPGRLQDRRTPLGELNWIFTAITDT 375


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
 Frame = -1

Query: 273 VYIGFFHSV--------ILLEACNSPPSNISAANCWAYLFVSCTINSMNSWSQISL 130
           VY+GF+ S+          ++  N P  N  A+ CWA L  S  + S   W +I L
Sbjct: 423 VYMGFYKSLQSAGAAITYRMDTLNIPYMNYFAS-CWALLCGSLIVASPVIWKKIKL 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,035,300
Number of Sequences: 5004
Number of extensions: 67879
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)