Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00091
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073           31   1.1  
02_02_0497 + 10961079-10963824,10964182-10964282,10964759-109648...    29   2.6  
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51...    29   4.5  
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141...    28   7.8  

>08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073
          Length = 900

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/52 (30%), Positives = 32/52 (61%)
 Frame = +3

Query: 510 SHLNSKFTELYIMKQNIALDESLLQWKGWLNINQFIPNKAAAVGIKTYEICE 665
           SHL +    L I  +++ +D+++L WK W+    F+ ++ AA G++ +E+ E
Sbjct: 367 SHLKACLLYLSIFSEDVEIDKNILIWK-WI-AEGFVQDEQAA-GVELFELGE 415


>02_02_0497 +
           10961079-10963824,10964182-10964282,10964759-10964800,
           10966918-10966986
          Length = 985

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = -2

Query: 536 FRELGIQMAITGSTLKSFACEGSRLRFLKFSELLKCKHLLSNWNLLSDIYTLKPGVEKMF 357
           FR L  +  +TG+T+ S   + + +   + +     +  L+ WNL+S +Y      ++ F
Sbjct: 564 FRSLAGRNIVTGNTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAF 623

Query: 356 CSVFQYSS 333
           C   Q  S
Sbjct: 624 CLFHQLQS 631


>07_01_0070 +
           515247-515397,516198-516265,516360-518456,518750-518900,
           519883-520638,520990-521164,521303-521387
          Length = 1160

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 225 NYRPPVGLQNERNQCRRVIGVLRNITG--DGNRHKE 326
           +Y PP+  Q E N C+R+  V+  + G  D   HK+
Sbjct: 307 DYSPPLETQQEHNACKRLPSVVAKLMGLEDLPEHKD 342


>11_01_0179 -
           1412391-1412863,1412947-1413412,1413504-1414551,
           1414639-1414725,1416244-1416411,1416785-1416958,
           1417662-1417720,1418132-1420154,1420549-1420647,
           1420998-1421796,1422101-1422120,1422446-1422513
          Length = 1827

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +3

Query: 510 SHLNSKFTELYIMKQNIALDESLLQWKGWLNINQFIPNKAAAVGIKTYEICE 665
           SHL +    L + ++   ++++LL WK W+    FI N+  A GI  +E+ E
Sbjct: 472 SHLKACMLYLSLFREEYGIEKNLLIWK-WI-AEGFIQNE-HATGIGLFELGE 520


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,498,872
Number of Sequences: 37544
Number of extensions: 424633
Number of successful extensions: 902
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)