Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00091
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   4.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.6  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   4.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   4.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.1  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -2

Query: 374 GVEKMFCSVFQYSSTRFFMTIPIASNIPKNTNNSSTLVSFIL*SYW 237
           GV KM  +   YS TRF       S+  K    +   V+F+  S W
Sbjct: 78  GVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 123


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 310 PSPVIFRRTPITRLHWFLSFCNPT 239
           P+ ++ RR   TRL W +   N T
Sbjct: 343 PTILMMRRPKKTRLRWMMEIPNVT 366


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -2

Query: 374 GVEKMFCSVFQYSSTRFFMTIPIASNIPKNTNNSSTLVSFIL*SYW 237
           GV KM  +   YS TRF       S+  K    +   V+F+  S W
Sbjct: 94  GVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 139


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 311 PIASNIPKNTNNSS 270
           P A N+P+NTN+ +
Sbjct: 768 PSAQNVPQNTNSQA 781



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 654  RKFLCP--LLQLCLE*IG*CSTNLSTAAAIHLKQCSASLYIIP*TWNSNGYHRLHFK 490
            +K L P  LL  C+   G CS+ +  +  ++ K    + YI+  + +S+ Y    +K
Sbjct: 909  KKVLSPGELLSSCVSNDGGCSSLVDVSTPVNKKVYKQNDYIVDESSSSSFYSSFLYK 965


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -2

Query: 374 GVEKMFCSVFQYSSTRFFMTIPIASNIPKNTNNSSTLVSFIL*SYW 237
           GV KM  +   YS TRF       S+  K    +   V+F+  S W
Sbjct: 151 GVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 196


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 344 QYSSTRFFMTIPIASNIPKNT 282
           Q   T F  ++PI  N+P+ T
Sbjct: 208 QAEYTDFLKSVPIFKNLPEET 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,698
Number of Sequences: 438
Number of extensions: 4650
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)