Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00091
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51200.1 68418.m06349 expressed protein                             29   2.8  
At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR...    29   2.8  
At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc ...    29   3.7  
At5g06610.1 68418.m00747 expressed protein contains Pfam profile...    28   4.9  
At3g50430.1 68416.m05516 expressed protein                             28   6.5  
At3g23110.1 68416.m02913 disease resistance family protein conta...    28   6.5  
At2g36090.1 68415.m04432 F-box family protein contains Pfam PF00...    28   6.5  
At1g69910.1 68414.m08045 protein kinase family protein contains ...    28   6.5  
At4g07690.1 68417.m01209 hypothetical protein includes At2g24900...    27   8.6  

>At5g51200.1 68418.m06349 expressed protein
          Length = 1808

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = -1

Query: 165  INSMNSWSQISLKIS*GSLTATVGPECSLK 76
            I+S+++ S+I  +I   SL+A+  P+CSLK
Sbjct: 1189 ISSLDNRSEILYRILDASLSASASPDCSLK 1218


>At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1219

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 325 NRVEEYWNTEQNIFSTPGFKVYMSLRRFQLLSRCLHFNNSENLRNLNLD 471
           +++EE W+ E+++    G   ++ L     L +CL   N+ NL  LNL+
Sbjct: 630 SQLEEIWDDEKDV----GMLKWVDLSHSINLRQCLGLANAHNLERLNLE 674


>At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc
           finger domain-containing protein-related contains Pfam
           profiles PF03468: XS domain, weak hit to PF03470: XS
           zinc finger domain
          Length = 625

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 156 WNLLCRKQIDMPNN*LLKCWTAGNYRPPVGL-QNERNQCRRVIGVLRNITGDGN 314
           W ++ +K  + P N   K W + N  PP      ++ +   V G   N++G GN
Sbjct: 44  WEVISKKNKNKPGNTSGKTWVSQNSNPPRAWGGQQQGRGSNVSGRGNNVSGRGN 97


>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
           PF04788: Protein of unknown function (DUF620)
          Length = 368

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 271 DELLVFFGILLAMGIVIKNRVEEYWNTEQNIFSTPGFKVYMSLRRFQLLSRCLHFNNSEN 450
           D L+  FG  L  GI +  R+EE W  +   F  PG  V   +   ++     H +  ++
Sbjct: 304 DVLISRFGETLKGGISV-TRMEEKWTIDDVAFDVPGLSVDCFIPPKEMKMDFHHQDAQKH 362

Query: 451 LRNLN 465
           L N N
Sbjct: 363 LPNYN 367


>At3g50430.1 68416.m05516 expressed protein 
          Length = 642

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 446 SELLKCKHLLSNWNLLSDIYTLKPGVEK 363
           S++LKCK   +NW+ +SDI+ +   + K
Sbjct: 170 SDVLKCKLEKANWSTVSDIFRVLRNILK 197


>At3g23110.1 68416.m02913 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 835

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 400 RRFQLLSRCLHFNNSENLRNLNLDPSQAKLFKVE 501
           R   LLS  LH N S N    N+ PS A + K+E
Sbjct: 666 RSIGLLSELLHLNLSGNAFTGNIPPSLASITKLE 699


>At2g36090.1 68415.m04432 F-box family protein contains Pfam
           PF00646: F-box domain; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 317

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 530 ELGIQMAITGSTLKSFACEGSRLRFLKFSELLKCKHLLSNW 408
           E  I   + G+TL S +C  S L  L  +E+L  K   S W
Sbjct: 26  ESHILTRLDGATLASVSCASSHLHHLASNEILWSKICRSTW 66


>At1g69910.1 68414.m08045 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 636

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 371 VEKMFCSVFQYSSTRFFMTIPIASNIPKNTNNSSTL 264
           ++ +  S+  YSS    +T+   +N  +NTNN S+L
Sbjct: 71  IKNLTFSILHYSSISSSLTLSPITNTNRNTNNCSSL 106


>At4g07690.1 68417.m01209 hypothetical protein includes At2g24900,
           At5g35040, At3g30500, At4g07690
          Length = 248

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 175 FLHNKFHELLVPN*SKNLVRVTYSDSGTRVFLKRFTPF 62
           F+ +  H+ ++     N + VT+SD    V   RFTPF
Sbjct: 84  FVRSTTHKYMIE--FMNAIEVTHSDPRETVLFNRFTPF 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,748,245
Number of Sequences: 28952
Number of extensions: 345932
Number of successful extensions: 830
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)