Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00090
(775 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A3FMR3 Cluster: Pol-like protein; n=2; Biomphalaria gla... 57 4e-07
UniRef50_Q9GP60 Cluster: Pol protein; n=1; Drosophila melanogast... 56 1e-06
UniRef50_Q9U4W1 Cluster: Pol-like protein; n=1; Aedes aegypti|Re... 55 2e-06
UniRef50_Q24363 Cluster: Putative ORF2; n=2; melanogaster subgro... 54 3e-06
UniRef50_UPI00015B4771 Cluster: PREDICTED: similar to secreted p... 52 1e-05
UniRef50_Q9TYX8 Cluster: Putative uncharacterized protein R11E3.... 48 3e-04
UniRef50_UPI00015B43F6 Cluster: PREDICTED: similar to pol-like p... 46 0.001
UniRef50_UPI0000D57951 Cluster: PREDICTED: similar to RNA-direct... 44 0.006
UniRef50_UPI0000D5790F Cluster: PREDICTED: similar to RNA-direct... 41 0.030
UniRef50_Q868R0 Cluster: Reverse transcriptase; n=1; Anopheles g... 41 0.039
UniRef50_Q8I7P8 Cluster: ORF1; n=2; Drosophila melanogaster|Rep:... 40 0.069
UniRef50_Q868S4 Cluster: Reverse transcriptase; n=1; Anopheles g... 40 0.091
UniRef50_UPI0000D5776D Cluster: PREDICTED: similar to Hypothetic... 37 0.49
UniRef50_Q4EC82 Cluster: Pol protein; n=2; Wolbachia endosymbion... 37 0.64
UniRef50_Q3LG55 Cluster: Reverse transcriptase; n=4; Bilateria|R... 36 1.1
UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile... 36 1.1
UniRef50_Q1ZBI5 Cluster: Putative uncharacterized protein; n=1; ... 36 1.5
UniRef50_Q4QQE6 Cluster: Endonuclease-reverse transcriptase; n=2... 36 1.5
UniRef50_Q7PYH6 Cluster: ENSANGP00000018453; n=4; Bilateria|Rep:... 35 2.0
UniRef50_UPI0000E4A69A Cluster: PREDICTED: similar to reverse tr... 35 2.6
UniRef50_UPI0000D57919 Cluster: PREDICTED: hypothetical protein,... 34 3.4
UniRef50_O18558 Cluster: Lian-Aa1 retrotransposon protein; n=1; ... 34 3.4
UniRef50_Q868Q6 Cluster: Reverse transcriptase; n=3; Anopheles g... 34 4.5
UniRef50_A3LY73 Cluster: Predicted protein; n=1; Pichia stipitis... 33 6.0
UniRef50_Q868S6 Cluster: Reverse transcriptase; n=2; Culicidae|R... 33 7.9
>UniRef50_A3FMR3 Cluster: Pol-like protein; n=2; Biomphalaria
glabrata|Rep: Pol-like protein - Biomphalaria glabrata
(Bloodfluke planorb)
Length = 1222
Score = 57.2 bits (132), Expect = 4e-07
Identities = 28/83 (33%), Positives = 40/83 (48%)
Frame = -2
Query: 273 GRFQCSNVAWGSSISNHYGSRLLDMVDKNKWCILNTGKATRRTQPHEEISAPDLSICTPN 94
G F N WGS+ ++ G L D+ ++ CILN T + DL++C P
Sbjct: 130 GDFNAHNTMWGSNNTDTRGRMLEDIFLQHDLCILNDASPTYLHPGTGSFTCIDLTVCVPG 189
Query: 93 LASIVSWNTLSSSYGSDHFPIVI 25
L W+ + GSDHFPI+I
Sbjct: 190 LLDDFKWSVSNDLRGSDHFPIII 212
Score = 41.1 bits (92), Expect = 0.030
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = -3
Query: 494 EDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINN-ICYVSLYIPHPTSSVYNE 318
ED GGV +L+K++I + + + IT++ I SLY+P +
Sbjct: 56 EDAERASGGVCILVKDSIPHERVELQTTLQAVAA-RITLHKVITCCSLYLPPGAPLNRTD 114
Query: 317 IESIFSIFPNPILIMGDFNA 258
+E + P P LI+GDFNA
Sbjct: 115 MEDLLKQLPRPYLILGDFNA 134
Score = 38.7 bits (86), Expect = 0.16
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = -1
Query: 649 SQIIQWNCRSISSKKCDIIYLANKYQPFLISLQETWLRPGFNFR 518
S+I+QWNCR + + ++ L + P + LQET+L+ +FR
Sbjct: 3 SRIVQWNCRGLKANYEEMQLLMDSETPVAVCLQETFLKDCISFR 46
>UniRef50_Q9GP60 Cluster: Pol protein; n=1; Drosophila
melanogaster|Rep: Pol protein - Drosophila melanogaster
(Fruit fly)
Length = 1227
Score = 56.0 bits (129), Expect = 1e-06
Identities = 26/80 (32%), Positives = 44/80 (55%)
Frame = -2
Query: 246 WGSSISNHYGSRLLDMVDKNKWCILNTGKATRRTQPHEEISAPDLSICTPNLASIVSWNT 67
WGS +N G ++ ++ +N +LN G T + H + D+S+ +P +A + SW+
Sbjct: 143 WGSPRTNTRGKKIETVILENSLIVLNDGSPTHLST-HNTFTHIDISLISPQIAHMCSWSI 201
Query: 66 LSSSYGSDHFPIVINFPIAT 7
+ +GSDHFPI I+ T
Sbjct: 202 SDNLHGSDHFPITIHINTPT 221
>UniRef50_Q9U4W1 Cluster: Pol-like protein; n=1; Aedes aegypti|Rep:
Pol-like protein - Aedes aegypti (Yellowfever mosquito)
Length = 1208
Score = 54.8 bits (126), Expect = 2e-06
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Frame = -2
Query: 246 WGSSISNHYGSRLLDMVDKNKWCILNTGKATRRTQPHEEISAPDLSICTPNLASIVSWNT 67
WGS N GS ++D+ +K ILN G AT T+ SA D+S+C+P++ + + W
Sbjct: 146 WGSVSPNDRGSLIMDVAEKLDLVILNDG-ATTFTRGQRN-SAIDVSLCSPSIVNRLLWTA 203
Query: 66 LSSSYGSDHFPIVINF---PIATS 4
GSDH PI I+ P ATS
Sbjct: 204 KEDPMGSDHHPIFIHIDEQPQATS 227
>UniRef50_Q24363 Cluster: Putative ORF2; n=2; melanogaster
subgroup|Rep: Putative ORF2 - Drosophila melanogaster
(Fruit fly)
Length = 1219
Score = 54.4 bits (125), Expect = 3e-06
Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Frame = -2
Query: 309 NFFYISQS-DLNHGRFQCSNVAWGSSISNHYGSRLLDMVDKNKWCILNTGKATRRTQPHE 133
N F I Q+ L G F + WGS +N G +D N IL K+ H
Sbjct: 117 NTFNIQQTPSLITGDFNGWHHPWGSPTTNKRGKITHRFID-NMHLILLNDKSPTHFSTHN 175
Query: 132 EISAPDLSICTPNLASIVSWNTLSSSYGSDHFPIVIN-FP 16
+ DL++C+P LA W L+ +GSDHFPI+ FP
Sbjct: 176 TYTHIDLTLCSPILAPHAKWKILNDLHGSDHFPIITTLFP 215
Score = 36.7 bits (81), Expect = 0.64
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 643 IIQWNCRSISSKKCDIIYLANKYQPFLISLQETWLRPGFNFRIP 512
IIQWN + + ++ L KY P +ISLQET ++ N P
Sbjct: 5 IIQWNLKGYLNNYSHLLILIKKYSPHIISLQETHIQYTNNIPTP 48
>UniRef50_UPI00015B4771 Cluster: PREDICTED: similar to secreted
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to secreted protein - Nasonia vitripennis
Length = 1163
Score = 52.4 bits (120), Expect = 1e-05
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = -2
Query: 273 GRFQCSNVAWGSSISNHYGSRLLDMVDKNK-WCILNTGKATRRTQPHEEISAPDLSICTP 97
G F + WGS I N G L ++ + + ILN ATR H + S PD+S+ +P
Sbjct: 309 GDFNAQHNMWGSEIENGLGRTLRSALESSPHFYILNDKLATRI---HSKTSCPDISLTSP 365
Query: 96 NLASIVSWNTLSSSYGSDHFPI 31
+L + ++ S GSDHFPI
Sbjct: 366 DLYTCINLKMGEDSMGSDHFPI 387
>UniRef50_Q9TYX8 Cluster: Putative uncharacterized protein R11E3.3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein R11E3.3 - Caenorhabditis elegans
Length = 931
Score = 48.0 bits (109), Expect = 3e-04
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = -2
Query: 309 NFFYISQSDLNHGRFQCSNVAWGSSISNHY-GSRLLDMVDKNKWCILNTGKATRRTQPHE 133
N F + G + AW S S G L +++D + I+ + R +
Sbjct: 26 NIFQTKSKSIISGDVNAHHSAWHSEGSEDTRGRELAELIDLHPDLIIQNEQVHTRADTYS 85
Query: 132 EISAPDLSICTPNLASIVSWNTLSSSYGSDHFPI 31
IS+PD++ICT +LA+ W+TL GSDH P+
Sbjct: 86 -ISSPDITICTADLATKCHWSTL-YKLGSDHIPM 117
>UniRef50_UPI00015B43F6 Cluster: PREDICTED: similar to pol-like
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to pol-like protein - Nasonia vitripennis
Length = 963
Score = 45.6 bits (103), Expect = 0.001
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = -2
Query: 273 GRFQCSNVAWGSSISNHYGSRLLDMVDKNKWCILNTG-KATRRTQPHEEISAPDLSICTP 97
G F + W +H G + + ILN +AT +P + +PD+S +
Sbjct: 139 GDFNAHHSMWSVGKEDHIGKHIASEITHTNLVILNDPFRATLIPKPQNKPGSPDISAISL 198
Query: 96 NLASIVSWNTLSSSYGSDHFPIVI 25
NL W+ L + G DH P+ I
Sbjct: 199 NLIHKTEWSLLGDALGGDHLPVSI 222
Score = 38.7 bits (86), Expect = 0.16
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = -1
Query: 646 QIIQWNCRSISSKKCDIIYLANKYQPFLISLQETWLRPGFNFRIPKTLVFVKIDQM 479
+I+QWNCRS+ K ++ L N Y + LQETWL R+ K +ID++
Sbjct: 8 KILQWNCRSLRGKTYELESLLNNYN--VACLQETWLNSQDIVRL-KNFNISRIDRL 60
Score = 36.3 bits (80), Expect = 0.85
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = -3
Query: 473 GGVALLIKNNISFSQFTIPNHSSDFSIIAITINN----ICYVSLYIPHPTSSVYNEIESI 306
GG+ ++NN+SF + + F I+ I I ++LY H + I+++
Sbjct: 66 GGLITAVRNNLSFKNIPLTEKFNGFEILTTEIKYHKKIITVINLYRDHRIRTEIKSIKNL 125
Query: 305 FSIFP--NPILIMGDFNA 258
N ++I GDFNA
Sbjct: 126 IKYITEFNKVIICGDFNA 143
>UniRef50_UPI0000D57951 Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=2; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 971
Score = 43.6 bits (98), Expect = 0.006
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = -3
Query: 470 GVALLIKNNISFSQFTIPNHSSDFSIIAITI---NNICYVSLYIPHPTSSVYNEIESIFS 300
GVA+LIK +FS+ +PN+ IA+ +NI Y P + NE+ +
Sbjct: 69 GVAILIKKGFAFSEHQLPNNLQHLDCIAVDTYIDSNIITFFTYYNSPRQCLSNELMQYAA 128
Query: 299 IFPNPILIMGDFNAQ 255
P I I+GDFNA+
Sbjct: 129 SLPKAI-ILGDFNAR 142
>UniRef50_UPI0000D5790F Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 932
Score = 41.1 bits (92), Expect = 0.030
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -2
Query: 273 GRFQCSNVAWGSSISNHYGSRLLDMVDKNKWCILNTGKATRRTQPHEEISAPDLSICTPN 94
G F + AWGS + G L+D + + + I NTG + E +S DL+I +
Sbjct: 77 GDFNAKSPAWGSKKEDERGRILMDWIAQRDYTIQNTGDEPTFVR-GESVSNIDLTITSTG 135
Query: 93 LA-SIVSWNTLSSSYGSDH 40
LA I +W L SDH
Sbjct: 136 LADKIKNWKVLPEENLSDH 154
>UniRef50_Q868R0 Cluster: Reverse transcriptase; n=1; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 1173
Score = 40.7 bits (91), Expect = 0.039
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = -2
Query: 273 GRFQCSNVAWGSSISNHYGSRLLDMVDKNKWCILNTGKATRRT-QPHEEISAPDLSICTP 97
G F + AWGS+ + G LL+ V++ +LN G + T + S D++ +P
Sbjct: 120 GDFNAWHEAWGSARTKRKGEELLNTVEQLGLIVLNRGNTSTFTGRGIAGESVIDVTFASP 179
Query: 96 NLASIVSWNTLSSSYGSDHFPIVINFPIATSS 1
++ +W L S + SDH + F + +SS
Sbjct: 180 SIVRYNTWEVLKSYWYSDH--RYVRFSVDSSS 209
>UniRef50_Q8I7P8 Cluster: ORF1; n=2; Drosophila melanogaster|Rep:
ORF1 - Drosophila melanogaster (Fruit fly)
Length = 884
Score = 39.9 bits (89), Expect = 0.069
Identities = 23/85 (27%), Positives = 40/85 (47%)
Frame = -2
Query: 273 GRFQCSNVAWGSSISNHYGSRLLDMVDKNKWCILNTGKATRRTQPHEEISAPDLSICTPN 94
G F + AW + +N +G L ++ D K+ IL + T H+ A L +C N
Sbjct: 160 GDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPTYIPHNHKA-KASTLDLCLTN 218
Query: 93 LASIVSWNTLSSSYGSDHFPIVINF 19
+ + ++ + SDH P+VI +
Sbjct: 219 IPNQLANPAVMQELSSDHLPVVIKY 243
Score = 36.7 bits (81), Expect = 0.64
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = -1
Query: 658 MDQSQIIQWNCRSISSKKCDIIYLANKYQPFLISLQETWLRPGFNFRIPKTLVF 497
+D I+ WN R++ +K+ ++I + + ETWL F IP+ ++
Sbjct: 9 IDNLNIMAWNARAVRNKRIELIKFLENNHIHIALINETWLTHSDRFNIPEYTIY 62
>UniRef50_Q868S4 Cluster: Reverse transcriptase; n=1; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 973
Score = 39.5 bits (88), Expect = 0.091
Identities = 22/78 (28%), Positives = 37/78 (47%)
Frame = -2
Query: 273 GRFQCSNVAWGSSISNHYGSRLLDMVDKNKWCILNTGKATRRTQPHEEISAPDLSICTPN 94
G F WGS +N G+ +L+ + ++N G + + S DL+ C+P
Sbjct: 119 GDFNAWATEWGSKSTNARGNAVLEHFSRLNLVLVNVGFCPTFVR-NSRTSIIDLTFCSPA 177
Query: 93 LASIVSWNTLSSSYGSDH 40
LAS ++W ++ SDH
Sbjct: 178 LASSMNWRVSNAYTLSDH 195
>UniRef50_UPI0000D5776D Cluster: PREDICTED: similar to Hypothetical
115 kDa protein in type I retrotransposable element R1DM
(ORF 2); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to Hypothetical 115 kDa protein in type I
retrotransposable element R1DM (ORF 2) - Tribolium
castaneum
Length = 973
Score = 37.1 bits (82), Expect = 0.49
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = -2
Query: 273 GRFQCSNVAWGSSISNHYGSRLLDMVDKNKWCILNTGKATRRTQPHEEISAPDLSICTPN 94
G F + WG+ + G L D++ + + +LN G + + S D++ +P
Sbjct: 114 GDFNAKSYLWGNVSEDKRGKELADLIGELEMWVLNQGNQPTFVR-GQSSSIIDITFASPK 172
Query: 93 LASIV-SWNTLSSSYGSDHFPIV 28
+A V W+ + DH PIV
Sbjct: 173 VAQCVKGWHVHEDAPLGDHLPIV 195
>UniRef50_Q4EC82 Cluster: Pol protein; n=2; Wolbachia endosymbiont
of Drosophila ananassae|Rep: Pol protein - Wolbachia
endosymbiont of Drosophila ananassae
Length = 463
Score = 36.7 bits (81), Expect = 0.64
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = -2
Query: 246 WGSSISNHYGSRLLDMVD-KNKWCILNTGKATRRT-QPHEEISAPDLSICTPNLASIVSW 73
WG++ S + G L + V KN++ IL TG+AT SA D ++ + L + +S
Sbjct: 2 WGNARSCNRGKLLAEAVQAKNRYNILATGEATCYPFNKKANPSAIDFAVYSGFLPTHISI 61
Query: 72 NTLSSSYGSDHFPIVIN 22
+++S SDH P++IN
Sbjct: 62 SSVSE-LSSDHVPLIIN 77
>UniRef50_Q3LG55 Cluster: Reverse transcriptase; n=4; Bilateria|Rep:
Reverse transcriptase - Danio rerio (Zebrafish)
(Brachydanio rerio)
Length = 965
Score = 35.9 bits (79), Expect = 1.1
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Frame = -3
Query: 473 GGVALLIKNNISFSQF-TIPNHSSDFSIIAITINNICYVSLYI----PHPTSSVYNEIE- 312
GG LLI F+ ++P SS F A+TI + Y+++ + P +E++
Sbjct: 103 GGTGLLISKEWKFTLIPSLPTISS-FEFHAVTIIHPFYINVVVIYRPPGKLGHFLDELDV 161
Query: 311 --SIFSIFPNPILIMGDFN 261
S FS F P+L++GDFN
Sbjct: 162 LLSSFSNFDTPLLVLGDFN 180
>UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile
element jockey; n=4; Drosophiliti|Rep: RNA-directed DNA
polymerase from mobile element jockey - Drosophila
melanogaster (Fruit fly)
Length = 916
Score = 35.9 bits (79), Expect = 1.1
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = -3
Query: 473 GGVALLIKNNISFSQFTIPNHSSDFSIIAI----TINNICYVSLYIPHPTSSVYNEIESI 306
GG A++IK+ + S T P ++D I + ++ + ++Y+P + ++ +S+
Sbjct: 67 GGSAVIIKSRLCHSPLT-PISTNDRQIARVHLQTSVGTVTVAAVYLPPAERWIVDDFKSM 125
Query: 305 FSIFPNPILIMGDFNAQ 255
F+ N + GD+NA+
Sbjct: 126 FAALGNKFIAGGDYNAK 142
>UniRef50_Q1ZBI5 Cluster: Putative uncharacterized protein; n=1;
Psychromonas sp. CNPT3|Rep: Putative uncharacterized
protein - Psychromonas sp. CNPT3
Length = 161
Score = 35.5 bits (78), Expect = 1.5
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Frame = -3
Query: 500 IREDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIA---ITINNICYVSLYIPHPTSS 330
IREDR GGV + I +FS+ P ++ I ++ S+YIP ++
Sbjct: 41 IREDRITRGGGVLIGIGKGHTFSRVPTPRQEIMETVAKQARIGDLHVTIASVYIPPIANN 100
Query: 329 VYNEIE-------SIFSIFPNPILIMGDFNA 258
+IE ++ + P P+LI+GDFN+
Sbjct: 101 EKEKIEKFKEDLGNLAVVLPGPLLILGDFNS 131
>UniRef50_Q4QQE6 Cluster: Endonuclease-reverse transcriptase; n=2;
Schistosoma|Rep: Endonuclease-reverse transcriptase -
Schistosoma mansoni (Blood fluke)
Length = 831
Score = 35.5 bits (78), Expect = 1.5
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 631 NCRSISSKKCDIIYLANKYQPFLISLQETW 542
N RSI +KK D+ A+ YQP LI + E W
Sbjct: 5 NARSICNKKTDLALFASIYQPSLIMISEAW 34
>UniRef50_Q7PYH6 Cluster: ENSANGP00000018453; n=4; Bilateria|Rep:
ENSANGP00000018453 - Anopheles gambiae str. PEST
Length = 730
Score = 35.1 bits (77), Expect = 2.0
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 389 AITINNICYVSLYIPHPTS-SVYNEIESIFSIFPNP 285
+ T+ ICY++LY+ + T S NEI S FPNP
Sbjct: 323 SFTLRQICYITLYVRNMTEYSFINEIYSTVFAFPNP 358
>UniRef50_UPI0000E4A69A Cluster: PREDICTED: similar to reverse
transcriptase-like protein; n=4; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to reverse
transcriptase-like protein - Strongylocentrotus
purpuratus
Length = 2519
Score = 34.7 bits (76), Expect = 2.6
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -3
Query: 488 RSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAIT--INNICYVSLYIPHPTS 333
R D +GG+A++ + ++ S + + + + +T +CYV +Y P P++
Sbjct: 166 REDAHGGIAVIYRTGLNLSIINVESTHDSYERVCVTDPARMVCYVVIYRPPPST 219
>UniRef50_UPI0000D57919 Cluster: PREDICTED: hypothetical protein,
partial; n=2; Tribolium castaneum|Rep: PREDICTED:
hypothetical protein, partial - Tribolium castaneum
Length = 263
Score = 34.3 bits (75), Expect = 3.4
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = -2
Query: 273 GRFQCSNVAWGSSISNHYGSRLLDMVDKNKWCILNTGKATRRTQPHEEISAPDLSICTPN 94
G F + +G +ISN G L ++ C L T H S D I T N
Sbjct: 132 GDFNARHTDFGDTISNTNGRHLTRSLNTLPLCRLRNQFPTLIN--HVGTSIVDHIIVTDN 189
Query: 93 LASIVSWNT-LSSSYGSDHFPIVINFPI 13
L I + ++ + ++ SDH P+V NF +
Sbjct: 190 LTHITNTDSFIGTTVTSDHLPLVSNFTL 217
>UniRef50_O18558 Cluster: Lian-Aa1 retrotransposon protein; n=1;
Aedes aegypti|Rep: Lian-Aa1 retrotransposon protein -
Aedes aegypti (Yellowfever mosquito)
Length = 1189
Score = 34.3 bits (75), Expect = 3.4
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -2
Query: 255 NVAWGSSISNHYGSRLLDMVDKNKWCILNTG-KATRRTQPHEEISAPDLSICTPNLA-SI 82
++ WGSS N GS L++ + +LN G + T EE+ D+++C+ ++ +
Sbjct: 127 HIIWGSSDINLRGSSLMEYLSSTDLGLLNIGNRPTFMVSNREEVL--DITLCSNRISHEL 184
Query: 81 VSWNTLSSSYGSDH 40
+W+ SDH
Sbjct: 185 TNWHVSDEESLSDH 198
>UniRef50_Q868Q6 Cluster: Reverse transcriptase; n=3; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 1248
Score = 33.9 bits (74), Expect = 4.5
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Frame = -2
Query: 273 GRFQCSNVAWGSSISNHYGSRLLDMVDKNKWCILNTG-----KATRRTQPHE-EISAPDL 112
G F + AWGS + G LL +V+ +LN G + +P +++
Sbjct: 120 GDFNAWHTAWGSERTKPKGIALLQLVNGLGLEVLNIGTSHTFRGCGSARPSRIDVAFASP 179
Query: 111 SICTPNLA--SIVSWNTLSSSYGSDH 40
SIC P+LA S W LS SDH
Sbjct: 180 SICRPDLAANSATCWRILSRYSYSDH 205
>UniRef50_A3LY73 Cluster: Predicted protein; n=1; Pichia
stipitis|Rep: Predicted protein - Pichia stipitis
(Yeast)
Length = 696
Score = 33.5 bits (73), Expect = 6.0
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -3
Query: 509 NSCIREDRSDGYGGVALLIKNNISF-SQFTIPNHSSDFSIIAITINNICYVSLYIPHPTS 333
NSCI S G+GGV+ L+ IS F + +S S +IN CY S + T+
Sbjct: 246 NSCINTVESLGHGGVSELLAMYISLVPNFLVKLNSKITSTATSSINKKCY-SKIVSLVTT 304
Query: 332 SVYNEIESIF 303
+++ SIF
Sbjct: 305 NIFPLYPSIF 314
>UniRef50_Q868S6 Cluster: Reverse transcriptase; n=2; Culicidae|Rep:
Reverse transcriptase - Anopheles gambiae (African
malaria mosquito)
Length = 1049
Score = 33.1 bits (72), Expect = 7.9
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -2
Query: 273 GRFQCSNVAWGSSISNHYGSRLLDMVDKNKWCILNTGKATRRTQPHEEISAPDLSICTPN 94
G F V WGS +N G +L+ + + N G T ++ S D++ C+
Sbjct: 117 GDFNAWAVEWGSKRTNSRGDAVLESFARLGVTLGNAG-TTPTFNRNKRTSIVDITFCSTT 175
Query: 93 LASIVSWNTLSSSYGSDH 40
L+ ++W + SDH
Sbjct: 176 LSERLNWRVSDALTLSDH 193
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,192,549
Number of Sequences: 1657284
Number of extensions: 11926260
Number of successful extensions: 26448
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26428
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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