Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00090
         (775 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    24   1.6  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   2.7  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   2.7  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   6.3  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   6.3  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   6.3  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 168 YLKYTIYSYRPYPTVESHNDY*WSCPM 248
           Y+ +  Y YRPYP    +N + WS P+
Sbjct: 252 YVPFYRYCYRPYPV---YNQW-WSGPL 274


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 338 TSSVYNEIESIFSIFPNPI 282
           TSSV N  ES  S+FPN I
Sbjct: 49  TSSVSNFNESSSSVFPNYI 67


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 338 TSSVYNEIESIFSIFPNPI 282
           TSSV N  ES  S+FPN I
Sbjct: 49  TSSVSNFNESSSSVFPNYI 67


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 114 LSICTPNLASIVSWNTLSSSYGSDHFPIVINFP 16
           L   T  LA + S  TL  +YG D   +   FP
Sbjct: 126 LETTTRRLAFVNSAYTLVKAYGFDGLDLAWEFP 158


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 159 PYQYLKYTIYSYRPYP 206
           PY+++K T Y  +P P
Sbjct: 123 PYEWIKKTSYQSQPNP 138


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 159 PYQYLKYTIYSYRPYP 206
           PY+++K T Y  +P P
Sbjct: 123 PYEWIKKTSYQSQPNP 138


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,870
Number of Sequences: 336
Number of extensions: 3364
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)